8 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	ubq-2	Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...] (128 aa)
	F34H10.1	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family. (142 aa)
	ubq-1	Ubiquitin-related; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degrad [...] (838 aa)
	F52C6.3	Ubiquitin-like domain-containing protein. (197 aa)
	par-3	Partitioning defective protein 3; In cooperation with pkc-3, required for establishing cell polarity and regulating spindle orientation in the early embryo. Localization is crucial for recruiting par-6 and pkc-3 to the peripheral apical cortex and restricting par-2 to basolateral surfaces. Necessary for apicobasal and anterior-posterior asymmetries associated with cell adhesion and gastrulation during the first few cycles of embryogenesis, and also for epithelial cell polarity in the distal spermatheca. Regulates the asymmetric localization of csnk-1, ppk-1 and gpr-1/2 during the first [...] (1533 aa)
	ubl-1	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family. (163 aa)
	K08C9.7	Uncharacterized protein. (154 aa)
	F52C6.2	Ubiquitin-like domain-containing protein. (228 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F34H10.1	F52C6.2	F34H10.1.1	F52C6.2.1	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-like domain-containing protein.	0.561
F34H10.1	F52C6.3	F34H10.1.1	F52C6.3.1	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-like domain-containing protein.	0.561
F34H10.1	ubq-1	F34H10.1.1	F25B5.4a.2	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-related; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degrad [...]	0.561
F34H10.1	ubq-2	F34H10.1.1	ZK1010.1.1	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]	0.966
F52C6.2	F34H10.1	F52C6.2.1	F34H10.1.1	Ubiquitin-like domain-containing protein.	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	0.561
F52C6.2	K08C9.7	F52C6.2.1	K08C9.7.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.563
F52C6.2	ubl-1	F52C6.2.1	H06I04.4a.3	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.	0.701
F52C6.2	ubq-2	F52C6.2.1	ZK1010.1.1	Ubiquitin-like domain-containing protein.	Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]	0.885
F52C6.3	F34H10.1	F52C6.3.1	F34H10.1.1	Ubiquitin-like domain-containing protein.	Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family.	0.561
F52C6.3	K08C9.7	F52C6.3.1	K08C9.7.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.561
F52C6.3	ubl-1	F52C6.3.1	H06I04.4a.3	Ubiquitin-like domain-containing protein.	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.	0.561
F52C6.3	ubq-1	F52C6.3.1	F25B5.4a.2	Ubiquitin-like domain-containing protein.	Ubiquitin-related; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degrad [...]	0.486
F52C6.3	ubq-2	F52C6.3.1	ZK1010.1.1	Ubiquitin-like domain-containing protein.	Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]	0.920
K08C9.7	F52C6.2	K08C9.7.1	F52C6.2.1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.563
K08C9.7	F52C6.3	K08C9.7.1	F52C6.3.1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.561
K08C9.7	ubl-1	K08C9.7.1	H06I04.4a.3	Uncharacterized protein.	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.	0.907
K08C9.7	ubq-1	K08C9.7.1	F25B5.4a.2	Uncharacterized protein.	Ubiquitin-related; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degrad [...]	0.561
K08C9.7	ubq-2	K08C9.7.1	ZK1010.1.1	Uncharacterized protein.	Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]	0.966
ubl-1	F52C6.2	H06I04.4a.3	F52C6.2.1	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-like domain-containing protein.	0.701
ubl-1	F52C6.3	H06I04.4a.3	F52C6.3.1	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family.	Ubiquitin-like domain-containing protein.	0.561