29 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	aat-8	Amino Acid Transporter. (483 aa)
	B0454.6	AA_permease_C domain-containing protein. (585 aa)
	ajm-1	Apical junction molecule; Controls adherens junction integrity. Required for the correct rate and completion of elongation of the embryos. (1905 aa)
	atgp-2	Aamy domain-containing protein. (647 aa)
	slc-36.5	Aa_trans domain-containing protein. (489 aa)
	C50D2.2	AA_permease_C domain-containing protein. (589 aa)
	slc-25A29	SLC (SoLute Carrier) homolog; Belongs to the mitochondrial carrier (TC 2.A.29) family. (360 aa)
	aat-5	Amino Acid Transporter. (537 aa)
	aat-2	Amino Acid Transporter. (483 aa)
	F23F1.6	AA_permease_C domain-containing protein. (583 aa)
	atgp-1	Aamy domain-containing protein. (613 aa)
	aat-1	Amino Acid Transporter. (493 aa)
	aat-3	Amino Acid Transporter. (529 aa)
	aat-7	Amino Acid Transporter. (500 aa)
	skat-1	Probable amino acid transporter skat-1; Plays a role in the accumulation of vital dyes and endogenous fluorescent compounds in lysosome related organelles. Has an effect on lysosome related organelle (LRO) function, in a pathway with serotonin. (460 aa)
	slc-36.4	Aa_trans domain-containing protein. (481 aa)
	R01B10.3	SLC3A2_N domain-containing protein. (98 aa)
	srh-56	Serpentine Receptor, class H. (344 aa)
	aat-6	Amino acid transporter protein 6; Amino acid transporter that mediates the uptake of the L- enantiomers of various amino acids, including L-glutamate (Probable). May play a role in promoting fertility. (523 aa)
	aat-4	Amino Acid Transporter. (526 aa)
	slc-36.2	Aa_trans domain-containing protein. (449 aa)
	srh-59	Serpentine Receptor, class H. (336 aa)
	srh-60	Serpentine Receptor, class H. (336 aa)
	slc-36.3	Aa_trans domain-containing protein. (454 aa)
	Y43F4B.7	Aa_trans domain-containing protein. (455 aa)
	srh-57	Serpentine Receptor, class H. (320 aa)
	srh-305	Serpentine Receptor, class H. (320 aa)
	Y51F10.4	Aa_trans domain-containing protein. (598 aa)
	aat-9	Amino Acid Transporter. (541 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0454.6	aat-8	B0454.6.1	F28F9.4.1	AA_permease_C domain-containing protein.	Amino Acid Transporter.	0.478
B0454.6	atgp-1	B0454.6.1	F26D10.9a.1	AA_permease_C domain-containing protein.	Aamy domain-containing protein.	0.401
C50D2.2	aat-8	C50D2.2.1	F28F9.4.1	AA_permease_C domain-containing protein.	Amino Acid Transporter.	0.478
C50D2.2	atgp-1	C50D2.2.1	F26D10.9a.1	AA_permease_C domain-containing protein.	Aamy domain-containing protein.	0.413
R01B10.3	aat-5	R01B10.3.1	C55C2.5a.1	SLC3A2_N domain-containing protein.	Amino Acid Transporter.	0.415
R01B10.3	aat-6	R01B10.3.1	T11F9.4a.1	SLC3A2_N domain-containing protein.	Amino acid transporter protein 6; Amino acid transporter that mediates the uptake of the L- enantiomers of various amino acids, including L-glutamate (Probable). May play a role in promoting fertility.	0.441
R01B10.3	srh-59	R01B10.3.1	W10G11.10.1	SLC3A2_N domain-containing protein.	Serpentine Receptor, class H.	0.407
R01B10.3	srh-60	R01B10.3.1	W10G11.9.1	SLC3A2_N domain-containing protein.	Serpentine Receptor, class H.	0.408
Y43F4B.7	Y51F10.4	Y43F4B.7.1	Y51F10.4a.1	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.423
Y51F10.4	Y43F4B.7	Y51F10.4a.1	Y43F4B.7.1	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.423
Y51F10.4	slc-36.2	Y51F10.4a.1	T27A1.5a.1	Aa_trans domain-containing protein.	Aa_trans domain-containing protein.	0.423
aat-1	aat-3	F27C8.1.2	F52H2.2b.1	Amino Acid Transporter.	Amino Acid Transporter.	0.730
aat-1	atgp-1	F27C8.1.2	F26D10.9a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.950
aat-1	atgp-2	F27C8.1.2	C38C6.2a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.989
aat-2	atgp-1	F07C3.7.1	F26D10.9a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.909
aat-2	atgp-2	F07C3.7.1	C38C6.2a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.929
aat-3	aat-1	F52H2.2b.1	F27C8.1.2	Amino Acid Transporter.	Amino Acid Transporter.	0.730
aat-3	atgp-1	F52H2.2b.1	F26D10.9a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.538
aat-3	atgp-2	F52H2.2b.1	C38C6.2a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.901
aat-4	atgp-1	T13A10.10a.1	F26D10.9a.1	Amino Acid Transporter.	Aamy domain-containing protein.	0.458