33 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ptr-2	SSD domain-containing protein. (933 aa)
	ptr-1	SSD domain-containing protein. (956 aa)
	tes-1	TEStin (Human testis-derived transcript) homolog. (465 aa)
	spe-10	Palmitoyltransferase spe-10; Involved in spermatogenesis, specifically in the morphogenesis of fibrous body-membranous organelles (FB-MO), which are Golgi-derived organelles used for transporting sperm-specific components, in spermatocytes and in their localization into budding spermatids. Required for the proper formation of spermatids and spermatozoa. (351 aa)
	ZK856.5	Metallophos domain-containing protein. (459 aa)
	ptr-23	SSD domain-containing protein. (983 aa)
	ptr-22	SSD domain-containing protein. (888 aa)
	ptr-21	SSD domain-containing protein. (909 aa)
	ptr-20	SSD domain-containing protein. (860 aa)
	Y50D4A.1	Uncharacterized protein. (821 aa)
	Y43E12A.2	Zf-3CxxC domain-containing protein. (267 aa)
	ptr-19	SSD domain-containing protein. (1003 aa)
	ptr-18	SSD domain-containing protein. (895 aa)
	ptr-17	SSD domain-containing protein. (936 aa)
	ptr-16	SSD domain-containing protein. (898 aa)
	ptr-15	SSD domain-containing protein. (840 aa)
	ptr-14	SSD domain-containing protein. (877 aa)
	ptr-13	SSD domain-containing protein. (851 aa)
	ptr-12	SSD domain-containing protein. (901 aa)
	H39E23.3	Uncharacterized protein. (746 aa)
	ptr-11	SSD domain-containing protein. (820 aa)
	ptr-10	SSD domain-containing protein. (900 aa)
	ptr-9	Patched-related protein 9; Belongs to the patched family. (844 aa)
	ptr-24	SSD domain-containing protein. (892 aa)
	ptr-8	SSD domain-containing protein. (890 aa)
	F43D9.1	SSD domain-containing protein. (1226 aa)
	daf-6	SSD domain-containing protein. (913 aa)
	F31D4.5	Pleckstrin homology domain-containing family D member 1. (570 aa)
	F10E9.11	Uncharacterized protein. (111 aa)
	ptr-6	SSD domain-containing protein. (982 aa)
	ptr-5	SSD domain-containing protein. (961 aa)
	ptr-4	SSD domain-containing protein. (960 aa)
	ptr-3	SSD domain-containing protein. (927 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
daf-6	ptr-21	F31F6.5.1	Y65B4BR.3.1	SSD domain-containing protein.	SSD domain-containing protein.	0.466
ptr-1	ptr-13	C24B5.3.1	K07C10.1.1	SSD domain-containing protein.	SSD domain-containing protein.	0.424
ptr-1	ptr-15	C24B5.3.1	T07H8.6.2	SSD domain-containing protein.	SSD domain-containing protein.	0.437
ptr-1	ptr-16	C24B5.3.1	T21H3.2b.1	SSD domain-containing protein.	SSD domain-containing protein.	0.453
ptr-1	ptr-19	C24B5.3.1	Y39A1B.2a.1	SSD domain-containing protein.	SSD domain-containing protein.	0.434
ptr-1	ptr-20	C24B5.3.1	Y53F4B.28.1	SSD domain-containing protein.	SSD domain-containing protein.	0.423
ptr-1	ptr-21	C24B5.3.1	Y65B4BR.3.1	SSD domain-containing protein.	SSD domain-containing protein.	0.459
ptr-1	ptr-22	C24B5.3.1	Y80D3A.7a.1	SSD domain-containing protein.	SSD domain-containing protein.	0.405
ptr-1	ptr-4	C24B5.3.1	C45B2.7.1	SSD domain-containing protein.	SSD domain-containing protein.	0.412
ptr-1	ptr-8	C24B5.3.1	F44F4.4.1	SSD domain-containing protein.	SSD domain-containing protein.	0.453
ptr-10	ptr-11	F55F8.1.2	F56C11.2a.2	SSD domain-containing protein.	SSD domain-containing protein.	0.464
ptr-10	ptr-12	F55F8.1.2	K07A3.2a.1	SSD domain-containing protein.	SSD domain-containing protein.	0.423
ptr-10	ptr-15	F55F8.1.2	T07H8.6.2	SSD domain-containing protein.	SSD domain-containing protein.	0.535
ptr-10	ptr-4	F55F8.1.2	C45B2.7.1	SSD domain-containing protein.	SSD domain-containing protein.	0.667
ptr-10	ptr-5	F55F8.1.2	C53C11.3.1	SSD domain-containing protein.	SSD domain-containing protein.	0.406
ptr-10	ptr-8	F55F8.1.2	F44F4.4.1	SSD domain-containing protein.	SSD domain-containing protein.	0.400
ptr-11	ptr-10	F56C11.2a.2	F55F8.1.2	SSD domain-containing protein.	SSD domain-containing protein.	0.464
ptr-11	ptr-17	F56C11.2a.2	Y18D10A.7c.1	SSD domain-containing protein.	SSD domain-containing protein.	0.506
ptr-11	ptr-18	F56C11.2a.2	Y38F1A.3.1	SSD domain-containing protein.	SSD domain-containing protein.	0.492
ptr-11	ptr-2	F56C11.2a.2	C32E8.8.1	SSD domain-containing protein.	SSD domain-containing protein.	0.407