Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| F52B5.2 | ccnk-1 | F52B5.2.1 | F43D2.1.1 | Protein kinase domain-containing protein. | CYCLIN domain-containing protein; Belongs to the cyclin family. | 0.702 |
| F52B5.2 | cit-1.1 | F52B5.2.1 | F44B9.4a.1 | Protein kinase domain-containing protein. | Cyclin-T1.1; Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to production elongation by phosphorylating the CTD (carboxy- terminal domain) of the large subunit of RNA polymerase II (RNAP II). | 0.656 |
| F52B5.2 | cit-1.2 | F52B5.2.1 | F44B9.3a.1 | Protein kinase domain-containing protein. | Cyclin-T1.2; Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to production elongation by phosphorylating the CTD (carboxy- terminal domain) of the large subunit of RNA polymerase II (RNAP II). | 0.637 |
| F52B5.2 | cyh-1 | F52B5.2.1 | Y49F6B.1.1 | Protein kinase domain-containing protein. | CYclin H. | 0.464 |
| F52B5.2 | rpb-3 | F52B5.2.1 | C36B1.3.1 | Protein kinase domain-containing protein. | RPOLD domain-containing protein. | 0.464 |
| F52B5.2 | spt-5 | F52B5.2.1 | K08E4.1.2 | Protein kinase domain-containing protein. | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.558 |
| F54F7.10 | ccnk-1 | F54F7.10.1 | F43D2.1.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | CYCLIN domain-containing protein; Belongs to the cyclin family. | 0.540 |
| F54F7.10 | cdk-12 | F54F7.10.1 | B0285.1b.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Cyclin-dependent kinase 12; Cyclin-dependent kinase which displays CTD kinase activity: hyperphosphorylates 'Ser-2' in the C-terminal heptapeptide repeat domain (CTD) of the largest RNA polymerase II subunit, thereby acting as a key regulator of transcription elongation. Required for normal reproduction. | 0.540 |
| F54F7.10 | cit-1.1 | F54F7.10.1 | F44B9.4a.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Cyclin-T1.1; Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to production elongation by phosphorylating the CTD (carboxy- terminal domain) of the large subunit of RNA polymerase II (RNAP II). | 0.540 |
| F54F7.10 | cit-1.2 | F54F7.10.1 | F44B9.3a.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Cyclin-T1.2; Regulatory subunit of the cyclin-dependent kinase pair (CDK9/cyclin T) complex, also called positive transcription elongation factor B (P-TEFb), which is proposed to facilitate the transition from abortive to production elongation by phosphorylating the CTD (carboxy- terminal domain) of the large subunit of RNA polymerase II (RNAP II). | 0.540 |
| F54F7.10 | elb-1 | F54F7.10.1 | Y41C4A.10.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | RNA polymerase II transcription factor SIII p18 subunit. | 0.944 |
| F54F7.10 | elc-1 | F54F7.10.1 | Y82E9BR.15.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Skp1_POZ domain-containing protein. | 0.572 |
| F54F7.10 | elc-2 | F54F7.10.1 | W03H1.2.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | 0.576 |
| F54F7.10 | spt-16 | F54F7.10.1 | F55A3.3.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | FACT complex subunit spt-16; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment [...] | 0.540 |
| F54F7.10 | spt-4 | F54F7.10.1 | F54C4.2.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Transcription elongation factor SPT4; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. | 0.560 |
| F54F7.10 | spt-5 | F54F7.10.1 | K08E4.1.2 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Transcription elongation factor SPT5; May function as a component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II. DSIF may enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex. Belongs to the SPT5 family. | 0.540 |
| F54F7.10 | tceb-3 | F54F7.10.1 | R03D7.4.1 | Skp1_POZ domain-containing protein; Belongs to the SKP1 family. | Transcription elongation factor B polypeptide 3; SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex). | 0.909 |
| T24H10.1 | Y73B3A.8 | T24H10.1.1 | Y73B3A.8.1 | Putative transcription elongation factor S-II; Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by S-II allows the resumption of elongation from the new 3'-terminus (By similarity). Belongs to the TFS-II family. | annotation not available | 0.806 |
| T24H10.1 | Y73F8A.24 | T24H10.1.1 | Y73F8A.24c.1 | Putative transcription elongation factor S-II; Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by S-II allows the resumption of elongation from the new 3'-terminus (By similarity). Belongs to the TFS-II family. | General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.860 |
| T24H10.1 | ama-1 | T24H10.1.1 | F36A4.7.2 | Putative transcription elongation factor S-II; Necessary for efficient RNA polymerase II transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by S-II allows the resumption of elongation from the new 3'-terminus (By similarity). Belongs to the TFS-II family. | DNA-directed RNA polymerase II subunit RPB1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cl [...] | 0.998 |
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