STRINGSTRING
F52C6.3 F52C6.3 F34H10.1 F34H10.1 ubq-1 ubq-1 F41E7.9 F41E7.9 C36E6.2 C36E6.2 atm-1 atm-1 Y67D2.2 Y67D2.2 ubq-2 ubq-2 prx-5 prx-5 kxd-1 kxd-1 F52C6.2 F52C6.2 sqst-2 sqst-2 sqst-4 sqst-4 sqst-3 sqst-3 K08C9.7 K08C9.7 ubl-1 ubl-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F52C6.3Ubiquitin-like domain-containing protein. (197 aa)
F34H10.1Probable ribosomal protein F34H10.1; Belongs to the eukaryotic ribosomal protein eS31 family. (142 aa)
ubq-1Ubiquitin-related; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degrad [...] (838 aa)
F41E7.9Uncharacterized protein. (511 aa)
C36E6.2N_BRCA1_IG domain-containing protein. (239 aa)
atm-1Serine/threonine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling in the presence of DNA double strand breaks (DSBs) and other forms of DNA damage induced by ionizing radiation and other genotoxic stresses such as UV. Plays a role in maintaining genome stability. Belongs to the PI3/PI4-kinase family. ATM subfamily. (2378 aa)
Y67D2.2Ubiquitin carboxyl-terminal hydrolase. (474 aa)
ubq-2Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...] (128 aa)
prx-5TPR_REGION domain-containing protein. (502 aa)
kxd-1KxDL domain-containing protein. (140 aa)
F52C6.2Ubiquitin-like domain-containing protein. (228 aa)
sqst-2ZZ-type domain-containing protein. (242 aa)
sqst-4ZZ-type domain-containing protein. (177 aa)
sqst-3ZZ-type domain-containing protein. (229 aa)
K08C9.7Uncharacterized protein. (154 aa)
ubl-1Ubiquitin-like protein 1-40S ribosomal protein S27a; In the C-terminal section; belongs to the eukaryotic ribosomal protein eS31 family. (163 aa)
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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