9 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C01A2.4	Uncharacterized protein. (207 aa)
	vps-32.1	Related to yeast Vacuolar Protein Sorting factor. (221 aa)
	did-2	Doa4-Independent Degradation, homologous to yeast Did2. (205 aa)
	vps-60	Related to yeast Vacuolar Protein Sorting factor. (217 aa)
	R12C12.5	Uncharacterized protein. (236 aa)
	T24B8.2	Charged Multivesicular Body Protein homolog. (411 aa)
	vps-24	Related to yeast Vacuolar Protein Sorting factor. (208 aa)
	vps-2	Related to yeast Vacuolar Protein Sorting factor. (237 aa)
	vps-20	Related to yeast Vacuolar Protein Sorting factor. (208 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C01A2.4	R12C12.5	C01A2.4.1	R12C12.5.1	Uncharacterized protein.	Uncharacterized protein.	0.808
C01A2.4	T24B8.2	C01A2.4.1	T24B8.2.1	Uncharacterized protein.	Charged Multivesicular Body Protein homolog.	0.717
C01A2.4	did-2	C01A2.4.1	F23C8.6.1	Uncharacterized protein.	Doa4-Independent Degradation, homologous to yeast Did2.	0.968
C01A2.4	vps-2	C01A2.4.1	Y46G5A.12.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.968
C01A2.4	vps-20	C01A2.4.1	Y65B4A.3.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.745
C01A2.4	vps-24	C01A2.4.1	T27F7.1.2	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.865
C01A2.4	vps-32.1	C01A2.4.1	C56C10.3.2	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.858
C01A2.4	vps-60	C01A2.4.1	F41E6.9.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.549
R12C12.5	C01A2.4	R12C12.5.1	C01A2.4.1	Uncharacterized protein.	Uncharacterized protein.	0.808
R12C12.5	T24B8.2	R12C12.5.1	T24B8.2.1	Uncharacterized protein.	Charged Multivesicular Body Protein homolog.	0.961
R12C12.5	did-2	R12C12.5.1	F23C8.6.1	Uncharacterized protein.	Doa4-Independent Degradation, homologous to yeast Did2.	0.962
R12C12.5	vps-2	R12C12.5.1	Y46G5A.12.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.963
R12C12.5	vps-20	R12C12.5.1	Y65B4A.3.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.961
R12C12.5	vps-24	R12C12.5.1	T27F7.1.2	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.968
R12C12.5	vps-32.1	R12C12.5.1	C56C10.3.2	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.909
R12C12.5	vps-60	R12C12.5.1	F41E6.9.1	Uncharacterized protein.	Related to yeast Vacuolar Protein Sorting factor.	0.909
T24B8.2	C01A2.4	T24B8.2.1	C01A2.4.1	Charged Multivesicular Body Protein homolog.	Uncharacterized protein.	0.717
T24B8.2	R12C12.5	T24B8.2.1	R12C12.5.1	Charged Multivesicular Body Protein homolog.	Uncharacterized protein.	0.961
T24B8.2	did-2	T24B8.2.1	F23C8.6.1	Charged Multivesicular Body Protein homolog.	Doa4-Independent Degradation, homologous to yeast Did2.	0.987
T24B8.2	vps-2	T24B8.2.1	Y46G5A.12.1	Charged Multivesicular Body Protein homolog.	Related to yeast Vacuolar Protein Sorting factor.	0.969