Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| F15E6.3 | F43G6.5 | F15E6.3.1 | F43G6.5.1 | RRM-type RNA binding protein. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.666 |
| F15E6.3 | T15H9.6 | F15E6.3.1 | T15H9.6.1 | RRM-type RNA binding protein. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.665 |
| F15E6.3 | cpb-3 | F15E6.3.1 | B0414.5.1 | RRM-type RNA binding protein. | Cytoplasmic polyadenylation element-binding protein 3; Cytoplasmic polyadenylation element binding protein that binds to and regulates the translation of specific mRNAs (By similarity). May not be required for oogenesis. | 0.536 |
| F15E6.3 | fbf-1 | F15E6.3.1 | H12I13.4.1 | RRM-type RNA binding protein. | Fem-3 mRNA-binding factor 1; Involved in the control of stem cells and sex determination in the C.elegans hermaphrodite germline. May also play a role in the hermaphrodite germline proliferation and oogenesis. Binds specifically to the regulatory region of fem-3 3'-UTR and mediates the sperm/oocyte switch. Negatively regulates gld-3 expression, possibly by directly binding to two sites within the 3'-UTR of gld-3 isoform b. In association with the cye-1/cdk-2 complex, negatively regulates gld-1 expression in the distal germline cells of the mitotic zone. By binding to the 3'-UTR, repres [...] | 0.741 |
| F15E6.3 | fbf-2 | F15E6.3.1 | F21H12.5.1 | RRM-type RNA binding protein. | Fem-3 mRNA-binding factor 2; Involved in the control of stem cells and sex determination in the C.elegans hermaphrodite germline. May also play a role in the hermaphrodite germline proliferation and oogenesis. By binding to the 3'-UTR, represses phosphatase lip-1 expression in the distal part of the germline mitotic zone. Binds specifically to the regulatory region of fem-3 3'-UTR and mediates the sperm/oocyte switch. Negatively regulates gld-3 expression possibly by directly binding to two sites within the gld-3 isoform b 3'-UTR. Suppresses germline tumor formation by preventing the d [...] | 0.729 |
| F15E6.3 | fog-1 | F15E6.3.1 | Y54E10A.4b.1 | RRM-type RNA binding protein. | RRM domain-containing protein. | 0.662 |
| F15E6.3 | gld-1 | F15E6.3.1 | T23G11.3.1 | RRM-type RNA binding protein. | Female germline-specific tumor suppressor gld-1; RNA-binding protein which recognizes the 5'-UACUCAU-3' RNA consensus sequence. Binds sequences in both the 5'coding and the 3'-UTR region of rme-2 mRNA. Binds sequences in the 3'-UTR region of cye-1 mRNA. Binds to cyb-2.1, cyb-2.2 and cyb-3 mRNA. Binds sequences in the 3'-UTR region of tra-2 mRNA. Germ line-specific tumor suppressor essential for oogenesis. Controls the spatial pattern of translation of multiple oogenesis specific mRNAs (e.g. yolk receptor rme-2) by repression of translation during early meiotic prophase (leptotene to pa [...] | 0.854 |
| F15E6.3 | gld-2 | F15E6.3.1 | ZC308.1a.1 | RRM-type RNA binding protein. | Poly(A) RNA polymerase gld-2; Cytoplasmic poly(A) RNA polymerase that adds successive AMP monomers to the 3'-end of specific RNAs, forming a poly(A) tail. Acts as a regulator of mitosis/meiosis required for progression through meiotic prophase during oogenesis and spermatogenesis and for promotion of the entry into meiosis from the mitotic cell cycle. May act by regulating and activating gld-1 mRNA activity in germline. | 0.694 |
| F15E6.3 | gld-3 | F15E6.3.1 | T07F8.3a.1 | RRM-type RNA binding protein. | Defective in germ line development protein 3; Required maternally for germline survival and embryogenesis. Forms a complex with gls-1 which promotes the oogenic cell fate by freeing the translational repressor fbf to repress sperm promoting factors. Promotes maturation of primary spermatocytes to mature sperm. Required during hermaphrodite development to promote sperm fate, which is critical for determining the normal number of sperm. Promotion of sperm fate is at the expense of oogenesis, possibly through the negative regulation of fbf. Required during male development for the continu [...] | 0.663 |
| F15E6.3 | glp-1 | F15E6.3.1 | F02A9.6.1 | RRM-type RNA binding protein. | Protein glp-1; Involved in the specification of the cell fates of the blastomeres, ABa and APa. Proper signaling by glp-1 induces ABa descendants to produce anterior pharyngeal cells, and APa descendants to adopt a different fate. Contributes to the establishment of the dorsal-ventral axis in early embryos. Regulates germ cell mitotic proliferation probably by regulating MAP kinase phosphatase lip-1 expression. Plays a negative role in lifespan. | 0.694 |
| F15E6.3 | nos-3 | F15E6.3.1 | Y53C12B.3b.1 | RRM-type RNA binding protein. | Nanos-type domain-containing protein. | 0.581 |
| F15E6.3 | pap-1 | F15E6.3.1 | Y32F6A.3.1 | RRM-type RNA binding protein. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.664 |
| F15E6.3 | pgl-1 | F15E6.3.1 | ZK381.4b.1 | RRM-type RNA binding protein. | Guanyl-specific ribonuclease pgl-1; Guanyl-specific endoribonuclease which cleaves the phosphodiester bond in single-stranded RNA between the 3'-guanylic residue and the 5'-OH residue of adjacent nucleotide, resulting in the formation of a corresponding 2',3'-cyclic phosphate intermediate. Together with the P-granule component pgl-3, is involved in the formation of P-granules. Together with pgl-3, probably recruits other granule components such as pos-1, mex-3 and glh-1 to P-granules. In addition, may act redundantly with pgl-3 to protect germ cells from excessive germline apoptosis du [...] | 0.789 |
| F43G6.5 | F15E6.3 | F43G6.5.1 | F15E6.3.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | RRM-type RNA binding protein. | 0.666 |
| F43G6.5 | T15H9.6 | F43G6.5.1 | T15H9.6.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | 0.984 |
| F43G6.5 | cpb-1 | F43G6.5.1 | C40H1.1.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Cytoplasmic polyadenylation element-binding protein 1; Cytoplasmic polyadenylation element binding protein that binds to and regulates the translation of specific mRNAs. Essential for progression through meiosis. Involved in spermatogenesis. | 0.762 |
| F43G6.5 | cpb-2 | F43G6.5.1 | C30B5.3.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Cytoplasmic polyadenylation element-binding protein 2; Cytoplasmic polyadenylation element binding protein that binds to and regulates the translation of specific mRNAs (By similarity). Not required for oogenesis. | 0.759 |
| F43G6.5 | cpb-3 | F43G6.5.1 | B0414.5.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Cytoplasmic polyadenylation element-binding protein 3; Cytoplasmic polyadenylation element binding protein that binds to and regulates the translation of specific mRNAs (By similarity). May not be required for oogenesis. | 0.797 |
| F43G6.5 | fbf-1 | F43G6.5.1 | H12I13.4.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Fem-3 mRNA-binding factor 1; Involved in the control of stem cells and sex determination in the C.elegans hermaphrodite germline. May also play a role in the hermaphrodite germline proliferation and oogenesis. Binds specifically to the regulatory region of fem-3 3'-UTR and mediates the sperm/oocyte switch. Negatively regulates gld-3 expression, possibly by directly binding to two sites within the 3'-UTR of gld-3 isoform b. In association with the cye-1/cdk-2 complex, negatively regulates gld-1 expression in the distal germline cells of the mitotic zone. By binding to the 3'-UTR, repres [...] | 0.513 |
| F43G6.5 | fbf-2 | F43G6.5.1 | F21H12.5.1 | Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. | Fem-3 mRNA-binding factor 2; Involved in the control of stem cells and sex determination in the C.elegans hermaphrodite germline. May also play a role in the hermaphrodite germline proliferation and oogenesis. By binding to the 3'-UTR, represses phosphatase lip-1 expression in the distal part of the germline mitotic zone. Binds specifically to the regulatory region of fem-3 3'-UTR and mediates the sperm/oocyte switch. Negatively regulates gld-3 expression possibly by directly binding to two sites within the gld-3 isoform b 3'-UTR. Suppresses germline tumor formation by preventing the d [...] | 0.818 |
page 1 of 13