13 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	clp-6	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (627 aa)
	clp-3	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (752 aa)
	clp-4	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (716 aa)
	clp-10	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (634 aa)
	clp-9	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (718 aa)
	T06D8.10	Uncharacterized protein. (1490 aa)
	clp-2	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (805 aa)
	pxn-2	PeroXidasiN (Drosophila peroxidase) homolog. (1328 aa)
	clp-8	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (646 aa)
	C46A5.4	Uncharacterized protein. (1537 aa)
	ZC434.8	Probable arginine kinase ZC434.8. (360 aa)
	clp-7	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (778 aa)
	pxn-1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily. (1285 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C46A5.4	T06D8.10	C46A5.4.1	T06D8.10.1	Uncharacterized protein.	Uncharacterized protein.	0.699
C46A5.4	pxn-1	C46A5.4.1	ZK994.3.1	Uncharacterized protein.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.705
C46A5.4	pxn-2	C46A5.4.1	K09C8.5.1	Uncharacterized protein.	PeroXidasiN (Drosophila peroxidase) homolog.	0.709
T06D8.10	C46A5.4	T06D8.10.1	C46A5.4.1	Uncharacterized protein.	Uncharacterized protein.	0.699
T06D8.10	pxn-1	T06D8.10.1	ZK994.3.1	Uncharacterized protein.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.707
T06D8.10	pxn-2	T06D8.10.1	K09C8.5.1	Uncharacterized protein.	PeroXidasiN (Drosophila peroxidase) homolog.	0.711
pxn-1	C46A5.4	ZK994.3.1	C46A5.4.1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	Uncharacterized protein.	0.705
pxn-1	T06D8.10	ZK994.3.1	T06D8.10.1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	Uncharacterized protein.	0.707
pxn-1	pxn-2	ZK994.3.1	K09C8.5.1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	PeroXidasiN (Drosophila peroxidase) homolog.	0.819
pxn-2	C46A5.4	K09C8.5.1	C46A5.4.1	PeroXidasiN (Drosophila peroxidase) homolog.	Uncharacterized protein.	0.709
pxn-2	T06D8.10	K09C8.5.1	T06D8.10.1	PeroXidasiN (Drosophila peroxidase) homolog.	Uncharacterized protein.	0.711
pxn-2	pxn-1	K09C8.5.1	ZK994.3.1	PeroXidasiN (Drosophila peroxidase) homolog.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.819