STRINGSTRING
rer-1 rer-1 tat-5 tat-5 did-2 did-2 vps-36 vps-36 sec-6 sec-6 vps-4 vps-4 vps-2 vps-2 vps-20 vps-20 vps-28 vps-28 vps-24 vps-24 vps-25 vps-25
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rer-1Protein RER1 homolog; May be involved in protein transport along the secretory pathway; Belongs to the RER1 family. (191 aa)
tat-5Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1074 aa)
did-2Doa4-Independent Degradation, homologous to yeast Did2. (205 aa)
vps-36GLUE N-terminal domain-containing protein. (383 aa)
sec-6Exocyst complex component 3; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC6 family. (796 aa)
vps-4Related to yeast Vacuolar Protein Sorting factor; Belongs to the AAA ATPase family. (430 aa)
vps-2Related to yeast Vacuolar Protein Sorting factor. (237 aa)
vps-20Related to yeast Vacuolar Protein Sorting factor. (208 aa)
vps-28Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex, a regulator of vesicular trafficking process; Belongs to the VPS28 family. (210 aa)
vps-24Related to yeast Vacuolar Protein Sorting factor. (208 aa)
vps-25Related to yeast Vacuolar Protein Sorting factor. (183 aa)
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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