STRINGSTRING
bgal-1 bgal-1 his-1 his-1 his-46 his-46 hda-3 hda-3 his-28 his-28 his-18 his-18 his-38 his-38 hda-11 hda-11 his-56 his-56 ctbp-1 ctbp-1 his-5 his-5 his-60 his-60 hda-5 hda-5 his-64 his-64 his-31 his-31 his-50 his-50 his-37 his-37 his-14 his-14 his-10 his-10 his-26 his-26 hda-10 hda-10 his-67 his-67
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bgal-1Beta-galactosidase. (653 aa)
his-1Histone H4. (103 aa)
his-46Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
hda-3Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (465 aa)
his-28Histone H4. (103 aa)
his-18Histone H4. (103 aa)
his-38Histone H4. (103 aa)
hda-11Hist_deacetyl domain-containing protein. (334 aa)
his-56Histone H4. (103 aa)
ctbp-1C-terminal-binding protein 1; Binds DNA and represses gene expression. Plays a role in regulation of life span, possibly by regulating transcription of genes important for lipid metabolism. (727 aa)
his-5Histone H4. (103 aa)
his-60Histone H4. (103 aa)
hda-5Hist_deacetyl domain-containing protein. (508 aa)
his-64Histone H4. (103 aa)
his-31Histone H4. (103 aa)
his-50Histone H4. (103 aa)
his-37Histone H4. (103 aa)
his-14Histone H4. (103 aa)
his-10Histone H4. (103 aa)
his-26Histone H4. (103 aa)
hda-10Hist_deacetyl domain-containing protein. (517 aa)
his-67Histone H4. (103 aa)
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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