Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| agef-1 | apg-1 | Y6B3A.1a.1 | Y105E8A.9.1 | SEC7 domain-containing protein. | AP-1 complex subunit gamma. | 0.715 |
| agef-1 | apm-1 | Y6B3A.1a.1 | F55A12.7.1 | SEC7 domain-containing protein. | MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. | 0.653 |
| agef-1 | arf-1.1 | Y6B3A.1a.1 | F45E4.1.1 | SEC7 domain-containing protein. | ADP-ribosylation factor 1-like 1; GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus; Belongs to the small GTPase superfamily. Arf family. | 0.598 |
| agef-1 | arf-1.2 | Y6B3A.1a.1 | B0336.2.3 | SEC7 domain-containing protein. | ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function. Plays a role in cell shedding during embryogenesis probably by promoting the endocytosis of cell adhesion molecules. During neurogenesis, involved in cell autonomous Q.p neuroblast asymmetric divisions that generate one precursor cell and one apoptotic cell, probably by controlling endocytosis. | 0.815 |
| agef-1 | arf-3 | Y6B3A.1a.1 | F57H12.1.1 | SEC7 domain-containing protein. | ADP-ribosylation factor related (20.5 kD) (Arf-3); Belongs to the small GTPase superfamily. Arf family. | 0.829 |
| agef-1 | arf-6 | Y6B3A.1a.1 | Y116A8C.12.1 | SEC7 domain-containing protein. | ADP-Ribosylation Factor related; Belongs to the small GTPase superfamily. Arf family. | 0.785 |
| agef-1 | cav-1 | Y6B3A.1a.1 | T13F2.8a.1 | SEC7 domain-containing protein. | Caveolin-1; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity. | 0.463 |
| agef-1 | let-23 | Y6B3A.1a.1 | ZK1067.1d.1 | SEC7 domain-containing protein. | Receptor tyrosine-protein kinase let-23; Tyrosine-protein kinase receptor which, upon binding ligand lin-3, activates 2 signaling cascades: the let-60/Ras and MAP kinase signaling pathway and the let-60-independent phospholipase C-mediated Ca(2+) signaling pathway. Each pathway regulates distinct functions. By activating let-60/Ras, regulates larval development, induction of vulva cell precursors during vulva development, male spicule formation and posterior development of the epidermis. Probably by activating phospholipase plc-3 and inositol 1,4,5-trisphosphate receptor itr-1 signalin [...] | 0.475 |
| agef-1 | let-60 | Y6B3A.1a.1 | ZK792.6.1 | SEC7 domain-containing protein. | Ras protein let-60; The level of let-60 controls the switch between vulval and hypodermal cell fates during C.elegans vulval induction. May stimulate the guanine nucleotide exchange factor (GEF) activity of rap-1. Belongs to the small GTPase superfamily. Ras family. | 0.440 |
| agef-1 | lin-10 | Y6B3A.1a.1 | C09H6.2a.1 | SEC7 domain-containing protein. | Protein lin-10; Required specifically for the determination of 3 vulval precursor cell fates P5.p, P6.p and P7.p during late second and early third larval stages; required for basolateral localization of receptor tyrosine kinase let-23. Could have a general but redundant role in development, functioning in diverse cell lineages to control cell fates. Regulates the trafficking of the glutamate receptor glr-1 in the ventral nerve cord. | 0.402 |
| agef-1 | lin-2 | Y6B3A.1a.1 | F17E5.1a.1 | SEC7 domain-containing protein. | Protein lin-2; May play a structural role in the induction of the vulva. May be required for the localization of signal transduction molecules (such as let-23 receptor) to either the basal membrane domain or the cell junctions. | 0.700 |
| agef-1 | lin-7 | Y6B3A.1a.1 | Y54G11A.10a.1 | SEC7 domain-containing protein. | Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. | 0.463 |
| agef-1 | rab-7 | Y6B3A.1a.1 | W03C9.3.2 | SEC7 domain-containing protein. | RAB family. | 0.431 |
| agef-1 | rme-8 | Y6B3A.1a.1 | F18C12.2a.1 | SEC7 domain-containing protein. | J domain-containing protein. | 0.495 |
| agef-1 | unc-101 | Y6B3A.1a.1 | K11D2.3a.2 | SEC7 domain-containing protein. | AP-1 complex subunit mu-1-I; Component of the adaptor complexes which link clathrin to receptors in coated vesicles (Probable). Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration (Probable). Required for many aspects of development and behavior, including negative regulation of vulval differentiation. Required for the dendritic localization of potassium channel kvs-4 in the cholinergic motor neuron DA9. | 0.585 |
| apg-1 | agef-1 | Y105E8A.9.1 | Y6B3A.1a.1 | AP-1 complex subunit gamma. | SEC7 domain-containing protein. | 0.715 |
| apg-1 | apm-1 | Y105E8A.9.1 | F55A12.7.1 | AP-1 complex subunit gamma. | MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. | 0.998 |
| apg-1 | arf-1.1 | Y105E8A.9.1 | F45E4.1.1 | AP-1 complex subunit gamma. | ADP-ribosylation factor 1-like 1; GTP-binding protein that may be involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus; Belongs to the small GTPase superfamily. Arf family. | 0.925 |
| apg-1 | arf-1.2 | Y105E8A.9.1 | B0336.2.3 | AP-1 complex subunit gamma. | ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function. Plays a role in cell shedding during embryogenesis probably by promoting the endocytosis of cell adhesion molecules. During neurogenesis, involved in cell autonomous Q.p neuroblast asymmetric divisions that generate one precursor cell and one apoptotic cell, probably by controlling endocytosis. | 0.869 |
| apg-1 | arf-3 | Y105E8A.9.1 | F57H12.1.1 | AP-1 complex subunit gamma. | ADP-ribosylation factor related (20.5 kD) (Arf-3); Belongs to the small GTPase superfamily. Arf family. | 0.913 |
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