14 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ech-8	Enoyl-CoA Hydratase. (437 aa)
	acdh-2	Acyl CoA DeHydrogenase. (386 aa)
	acdh-13	Acyl CoA DeHydrogenase. (617 aa)
	acdh-5	Acyl CoA DeHydrogenase. (442 aa)
	acdh-1	Acyl CoA DeHydrogenase. (427 aa)
	acdh-12	Acyl CoA DeHydrogenase. (613 aa)
	ech-9	Enoyl-CoA Hydratase. (434 aa)
	acdh-9	Acyl CoA DeHydrogenase. (409 aa)
	dgat-2	Acyl-CoA:DiacylGlycerol AcylTransferase. (345 aa)
	acdh-8	Acyl CoA DeHydrogenase. (412 aa)
	acdh-3	Acyl CoA DeHydrogenase. (419 aa)
	acdh-10	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family. (417 aa)
	acdh-4	Acyl CoA DeHydrogenase. (385 aa)
	acdh-7	Acyl CoA DeHydrogenase. (412 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acdh-1	acdh-3	C55B7.4a.1	K06A5.6.2	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.902
acdh-1	acdh-4	C55B7.4a.1	T10E9.9b.1	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.901
acdh-1	ech-8	C55B7.4a.1	F01G10.2.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.890
acdh-1	ech-9	C55B7.4a.1	F01G10.3a.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.889
acdh-10	acdh-12	T08G2.3.2	E04F6.5a.2	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	Acyl CoA DeHydrogenase.	0.458
acdh-10	acdh-7	T08G2.3.2	T25G12.5.1	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	Acyl CoA DeHydrogenase.	0.958
acdh-10	acdh-8	T08G2.3.2	K05F1.3.1	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	Acyl CoA DeHydrogenase.	0.901
acdh-10	ech-8	T08G2.3.2	F01G10.2.1	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	Enoyl-CoA Hydratase.	0.895
acdh-10	ech-9	T08G2.3.2	F01G10.3a.1	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	Enoyl-CoA Hydratase.	0.893
acdh-12	acdh-10	E04F6.5a.2	T08G2.3.2	Acyl CoA DeHydrogenase.	Probable medium-chain specific acyl-CoA dehydrogenase 10, mitochondrial; This enzyme is specific for acyl chain lengths of 4 to 16. Belongs to the acyl-CoA dehydrogenase family.	0.458
acdh-12	acdh-7	E04F6.5a.2	T25G12.5.1	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.443
acdh-12	ech-8	E04F6.5a.2	F01G10.2.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.890
acdh-12	ech-9	E04F6.5a.2	F01G10.3a.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.880
acdh-13	acdh-7	C28C12.9.2	T25G12.5.1	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.437
acdh-13	ech-8	C28C12.9.2	F01G10.2.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.890
acdh-13	ech-9	C28C12.9.2	F01G10.3a.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.889
acdh-2	ech-8	C17C3.12c.1	F01G10.2.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.888
acdh-2	ech-9	C17C3.12c.1	F01G10.3a.1	Acyl CoA DeHydrogenase.	Enoyl-CoA Hydratase.	0.898
acdh-3	acdh-1	K06A5.6.2	C55B7.4a.1	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.902
acdh-3	acdh-4	K06A5.6.2	T10E9.9b.1	Acyl CoA DeHydrogenase.	Acyl CoA DeHydrogenase.	0.902