15 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	alh-2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (514 aa)
	rac-2	Ras-related protein rac-2; During gonad morphogenesis, plays a role in distal tip cell (DTC)-mediated guidance of gonad elongation. (195 aa)
	alh-6	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (563 aa)
	alh-1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (510 aa)
	alh-7	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (493 aa)
	alh-11	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (687 aa)
	nap-1	Nucleosome Assembly Protein; Belongs to the nucleosome assembly protein (NAP) family. (316 aa)
	alh-10	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (506 aa)
	mig-2	Rac-like GTPase. (195 aa)
	tpk-1	Thiamin pyrophosphokinase 1; Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate. Functions cell non-autonomously. (243 aa)
	alh-12	Aldedh domain-containing protein. (499 aa)
	cars-1	tRNA-synt_1e domain-containing protein. (909 aa)
	act-5	ACTin. (375 aa)
	alh-5	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (437 aa)
	alh-4	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (494 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
act-5	alh-12	T25C8.2.2	Y69F12A.2a.2	ACTin.	Aldedh domain-containing protein.	0.400
act-5	alh-4	T25C8.2.2	T05H4.13c.2	ACTin.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.405
act-5	alh-5	T25C8.2.2	T08B1.3.1	ACTin.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.424
act-5	alh-7	T25C8.2.2	F45H10.1a.2	ACTin.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.455
act-5	mig-2	T25C8.2.2	C35C5.4a.1	ACTin.	Rac-like GTPase.	0.752
act-5	rac-2	T25C8.2.2	K03D3.10.1	ACTin.	Ras-related protein rac-2; During gonad morphogenesis, plays a role in distal tip cell (DTC)-mediated guidance of gonad elongation.	0.845
alh-1	alh-2	F54D8.3a.1	K04F1.15.1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.801
alh-1	alh-6	F54D8.3a.1	F56D12.1a.2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.809
alh-11	alh-12	F42G9.5a.1	Y69F12A.2a.2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein.	0.903
alh-11	alh-6	F42G9.5a.1	F56D12.1a.2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.807
alh-12	act-5	Y69F12A.2a.2	T25C8.2.2	Aldedh domain-containing protein.	ACTin.	0.400
alh-12	alh-11	Y69F12A.2a.2	F42G9.5a.1	Aldedh domain-containing protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.903
alh-12	alh-6	Y69F12A.2a.2	F56D12.1a.2	Aldedh domain-containing protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.803
alh-2	alh-1	K04F1.15.1	F54D8.3a.1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.801
alh-2	alh-6	K04F1.15.1	F56D12.1a.2	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.803
alh-4	act-5	T05H4.13c.2	T25C8.2.2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	ACTin.	0.405
alh-4	alh-6	T05H4.13c.2	F56D12.1a.2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.815
alh-5	act-5	T08B1.3.1	T25C8.2.2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	ACTin.	0.424
alh-5	alh-6	T08B1.3.1	F56D12.1a.2	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.813
alh-6	alh-1	F56D12.1a.2	F54D8.3a.1	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.809