Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| B0511.6 | Y23H5B.6 | B0511.6.1 | Y23H5B.6a.1 | RNA helicase. | RNA helicase. | 0.990 |
| B0511.6 | drh-1 | B0511.6.1 | F15B10.2a.1 | RNA helicase. | Dicer-related helicase. | 0.662 |
| B0511.6 | drh-3 | B0511.6.1 | D2005.5.1 | RNA helicase. | Dicer Related Helicase. | 0.704 |
| B0511.6 | drsh-1 | B0511.6.1 | F26E4.10a.1 | RNA helicase. | Ribonuclease 3; Executes the initial step of microRNA (miRNA) processing in the nucleus, that is the cleavage of pri-miRNA to release pre-miRNA. Involved in pre-rRNA processing. Cleaves double-strand RNA and does not cleave single-strand RNA. Involved in fertility. Required for the function or synthesis of the let-7 miRNA. Belongs to the ribonuclease III family. | 0.429 |
| B0511.6 | ego-1 | B0511.6.1 | F26A3.3.1 | RNA helicase. | RNA-directed RNA polymerase related EGO-1. | 0.609 |
| B0511.6 | ergo-1 | B0511.6.1 | R09A1.1a.1 | RNA helicase. | Piwi-like protein ergo-1; Argonaute protein required for gene silencing in the endogenous RNA interference (RNAi) pathway. Involved in the 26G RNAi pathway and associates with both unmethylated and methylated 26G small interfering RNAs (26G- siRNAs), which are a class of 26 nucleotide siRNAs that possess a guanine residue at the 5'-end. Associated 26G-siRNAs are methylated by the methyltransferase henn-1, which stabilizes the siRNAs. Association with 26G- siRNAs is required for the biogenesis of secondary 22G-siRNAs (a class of 22 nucleotide siRNAs that possess a triphosphorylated guan [...] | 0.436 |
| B0511.6 | gld-1 | B0511.6.1 | T23G11.3.1 | RNA helicase. | Female germline-specific tumor suppressor gld-1; RNA-binding protein which recognizes the 5'-UACUCAU-3' RNA consensus sequence. Binds sequences in both the 5'coding and the 3'-UTR region of rme-2 mRNA. Binds sequences in the 3'-UTR region of cye-1 mRNA. Binds to cyb-2.1, cyb-2.2 and cyb-3 mRNA. Binds sequences in the 3'-UTR region of tra-2 mRNA. Germ line-specific tumor suppressor essential for oogenesis. Controls the spatial pattern of translation of multiple oogenesis specific mRNAs (e.g. yolk receptor rme-2) by repression of translation during early meiotic prophase (leptotene to pa [...] | 0.497 |
| B0511.6 | mut-14 | B0511.6.1 | C14C11.6.1 | RNA helicase. | MUTator; Belongs to the DEAD box helicase family. | 0.577 |
| B0511.6 | mut-16 | B0511.6.1 | B0379.3a.1 | RNA helicase. | MUTator. | 0.465 |
| B0511.6 | pir-1 | B0511.6.1 | T23G7.5a.1 | RNA helicase. | RNA/RNP complex-1-interacting phosphatase homolog; Possesses RNA 5'-triphosphatase and diphosphatase activities, but displays a poor protein-tyrosine phosphatase activity (By similarity). Binds RNA (By similarity). During small-RNA-mediated gene- silencing or RNA interference (RNAi), involved in the dcr-1-mediated processing of an amplified dsRNA intermediate. | 0.564 |
| B0511.6 | rde-1 | B0511.6.1 | K08H10.7.1 | RNA helicase. | RNA interference promoting factor RDE-1. | 0.432 |
| B0511.6 | rde-4 | B0511.6.1 | T20G5.11.1 | RNA helicase. | RNA interference promoting factor. | 0.475 |
| B0511.6 | rha-1 | B0511.6.1 | T07D4.3.1 | RNA helicase. | ATP-dependent RNA helicase A; Multifunctional ATP-dependent nucleic acid helicase that unwinds DNA and RNA in a 3' to 5' direction and that plays important roles in many processes, such as DNA replication, transcriptional activation, post-transcriptional RNA regulation, mRNA translation and RNA-mediated gene silencing. Requires a 3'-single-stranded tail as entry site for acid nuclei unwinding activities as well as the binding and hydrolyzing of any of the four ribo- or deoxyribo-nucleotide triphosphates (NTPs). Binds to DNA, RNA and small interfering siRNA. Plays a role in DNA replicat [...] | 0.445 |
| B0511.6 | rrf-3 | B0511.6.1 | F10B5.7.1 | RNA helicase. | RNA-dependent RNA polymerase Family. | 0.434 |
| B0511.6 | smg-2 | B0511.6.1 | Y48G8AL.6.2 | RNA helicase. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.706 |
| B0511.6 | smg-6 | B0511.6.1 | Y54F10AL.2a.1 | RNA helicase. | PINc domain-containing protein. | 0.441 |
| B0511.6 | xrn-1 | B0511.6.1 | Y39G8C.1.2 | RNA helicase. | 5'-3' exoribonuclease 1. | 0.498 |
| C08A9.3 | R02D3.8 | C08A9.3b.1 | R02D3.8.1 | Uncharacterized protein. | Exonuclease domain-containing protein. | 0.667 |
| C08A9.3 | phf-14 | C08A9.3b.1 | Y59A8A.2.1 | Uncharacterized protein. | PHd Finger family. | 0.463 |
| C08A9.3 | pir-1 | C08A9.3b.1 | T23G7.5a.1 | Uncharacterized protein. | RNA/RNP complex-1-interacting phosphatase homolog; Possesses RNA 5'-triphosphatase and diphosphatase activities, but displays a poor protein-tyrosine phosphatase activity (By similarity). Binds RNA (By similarity). During small-RNA-mediated gene- silencing or RNA interference (RNAi), involved in the dcr-1-mediated processing of an amplified dsRNA intermediate. | 0.464 |
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