20 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W07B8.4	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (335 aa)
	F32H5.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (356 aa)
	cpr-1	Gut-specific cysteine proteinase; Thiol protease. Has a role as a digestive enzyme. Belongs to the peptidase C1 family. (329 aa)
	cpr-6	Cathepsin B-like cysteine proteinase 6; Belongs to the peptidase C1 family. (379 aa)
	Y67D8C.9	Uncharacterized protein. (1144 aa)
	Y42A5A.1	Aminopeptidase. (1045 aa)
	cpr-5	Cathepsin B-like cysteine proteinase 5; Belongs to the peptidase C1 family. (344 aa)
	tsp-7	Tetraspanin. (232 aa)
	asp-2	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (429 aa)
	cpr-8	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (335 aa)
	cpr-3	Cathepsin B-like cysteine proteinase 3; Belongs to the peptidase C1 family. (370 aa)
	anp-1	Aminopeptidase. (988 aa)
	apn-1	DNA-(apurinic or apyrimidinic site) lyase. (396 aa)
	R03G8.6	Aminopeptidase. (747 aa)
	R03G8.4	Aminopeptidase. (786 aa)
	F57F5.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (351 aa)
	F49B2.6	Aminopeptidase. (1082 aa)
	cpr-4	Cathepsin B-like cysteine proteinase 4; Thiol protease which shows activity against the fluorogenic substrate z-Arg-Arg-AMC; Belongs to the peptidase C1 family. (335 aa)
	tag-196	Uncharacterized protein; Belongs to the peptidase C1 family. (477 aa)
	cpr-2	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (326 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F32H5.1	F49B2.6	F32H5.1.1	F49B2.6.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Aminopeptidase.	0.550
F32H5.1	R03G8.4	F32H5.1.1	R03G8.4.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Aminopeptidase.	0.548
F32H5.1	R03G8.6	F32H5.1.1	R03G8.6.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Aminopeptidase.	0.548
F32H5.1	Y42A5A.1	F32H5.1.1	Y42A5A.1.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Aminopeptidase.	0.550
F32H5.1	Y67D8C.9	F32H5.1.1	Y67D8C.9b.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Uncharacterized protein.	0.521
F32H5.1	anp-1	F32H5.1.1	T07F10.1a.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Aminopeptidase.	0.673
F32H5.1	asp-2	F32H5.1.1	T18H9.2.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.685
F32H5.1	tag-196	F32H5.1.1	F41E6.6.2	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.884
F32H5.1	tsp-7	F32H5.1.1	T23D8.2.1	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	Tetraspanin.	0.500
F49B2.6	F32H5.1	F49B2.6.1	F32H5.1.1	Aminopeptidase.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.550
F49B2.6	F57F5.1	F49B2.6.1	F57F5.1.1	Aminopeptidase.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.549
F49B2.6	R03G8.6	F49B2.6.1	R03G8.6.1	Aminopeptidase.	Aminopeptidase.	0.501
F49B2.6	W07B8.4	F49B2.6.1	W07B8.4a.1	Aminopeptidase.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.550
F49B2.6	Y42A5A.1	F49B2.6.1	Y42A5A.1.1	Aminopeptidase.	Aminopeptidase.	0.522
F49B2.6	Y67D8C.9	F49B2.6.1	Y67D8C.9b.1	Aminopeptidase.	Uncharacterized protein.	0.527
F49B2.6	anp-1	F49B2.6.1	T07F10.1a.1	Aminopeptidase.	Aminopeptidase.	0.488
F49B2.6	cpr-1	F49B2.6.1	C52E4.1.1	Aminopeptidase.	Gut-specific cysteine proteinase; Thiol protease. Has a role as a digestive enzyme. Belongs to the peptidase C1 family.	0.566
F49B2.6	cpr-2	F49B2.6.1	F36D3.9.1	Aminopeptidase.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.486
F49B2.6	cpr-3	F49B2.6.1	T10H4.12.1	Aminopeptidase.	Cathepsin B-like cysteine proteinase 3; Belongs to the peptidase C1 family.	0.548
F49B2.6	cpr-4	F49B2.6.1	F44C4.3.1	Aminopeptidase.	Cathepsin B-like cysteine proteinase 4; Thiol protease which shows activity against the fluorogenic substrate z-Arg-Arg-AMC; Belongs to the peptidase C1 family.	0.489