STRINGSTRING
SLG_28610 SLG_28610 SLG_29450 SLG_29450 SLG_31090 SLG_31090 SLG_31120 SLG_31120 SLG_31130 SLG_31130 SLG_31190 SLG_31190 SLG_31300 SLG_31300 edd edd SLG_32580 SLG_32580 SLG_33500 SLG_33500 SLG_34850 SLG_34850 SLG_35000 SLG_35000 SLG_35300 SLG_35300 coaBC coaBC SLG_37530 SLG_37530 ligI ligI SLG_12560 SLG_12560 ligK ligK ligC ligC SLG_12180 SLG_12180 SLG_11330 SLG_11330 SLG_11280 SLG_11280 SLG_09710 SLG_09710 ectD ectD SLG_07590 SLG_07590 SLG_06470 SLG_06470 SLG_06380 SLG_06380 SLG_19060 SLG_19060 SLG_18930 SLG_18930 SLG_15360 SLG_15360 SLG_14270 SLG_14270 SLG_19130 SLG_19130 SLG_19640 SLG_19640 fadJ fadJ SLG_26260 SLG_26260 SLG_22390 SLG_22390 SLG_27780 SLG_27780 SLG_28100 SLG_28100 SLG_28130 SLG_28130 SLG_28580 SLG_28580
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SLG_28610Conserved hypothetical protein. (311 aa)
SLG_29450Putative aminotransferase. (382 aa)
SLG_31090Conserved hypothetical protein. (572 aa)
SLG_31120Putative hydrolase. (571 aa)
SLG_31130Conserved hypothetical protein. (566 aa)
SLG_31190Conserved hypothetical protein. (286 aa)
SLG_31300Putative hydrolase. (283 aa)
eddPhosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (611 aa)
SLG_32580Putative hydrolase. (555 aa)
SLG_33500Conserved hypothetical protein. (225 aa)
SLG_34850Putative hydrolase. (269 aa)
SLG_35000Putative hydrolase. (351 aa)
SLG_35300Hypothetical protein. (269 aa)
coaBCPhosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (418 aa)
SLG_37530Protocatechuate 4,5-dioxygenase alpha chain. (124 aa)
ligI2-pyrone-4,6-dicarboxylic acid hydrolase; Contributes to the degradation of lignin at the level of the protocatechuate 4,5-cleavage pathway. Catalyzes the hydrolysis of 2-pyrone-4,6-dicarboxylate (PDC) to (4E)-oxalomesaconate (OMA). The keto form of OMA can tautomerize into the enol form, 4-carboxy-2-hydroxymuconate (CHM), under certain pH conditions. Also catalyzes the reverse reaction. Is essential for the growth of Sphingobium sp. SYK-6 on vanillate but is not responsible for the growth of this strain on syringate. Belongs to the metallo-dependent hydrolases superfamily. PDC hydrola [...] (293 aa)
SLG_12560Hypothetical protein. (351 aa)
ligK4-hydroxy-4-methyl-2-oxoadipate aldolase; Contributes to the degradation of lignin, being involved in the final step of the protocatechuate 4,5-cleavage pathway. Catalyzes the conversion of 4-carboxy-4-hydroxy-2-oxoadipate (CHA, also named 2- hydroxy-4-oxobutane-1,2,4-tricarboxylate) to pyruvate and oxaloacetate but also the decarboxylation of oxaloacetate to pyruvate and CO2. Is essential for catabolism and utilization of vanillate and syringate. Is also able to catalyze the formation of 4-hydroxy- 4-methyl-2-oxoglutarate (HMG) from two molecules of pyruvate ; Belongs to the LigK/PcmE [...] (228 aa)
ligC4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD. (315 aa)
SLG_12180HpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family. (259 aa)
SLG_11330Aromatic ring hydroxylase. (482 aa)
SLG_11280Conserved hypothetical protein. (296 aa)
SLG_09710MaoC-like dehydratase. (151 aa)
ectDEctoine hydroxylase. (306 aa)
SLG_07590Serine--glyoxylate aminotransferase. (396 aa)
SLG_06470Putative hydrolase. (287 aa)
SLG_06380Fumarylacetoacetase; Protein synonym:fumarylacetoacetate hydrolase. (432 aa)
SLG_19060Putative aldolase. (221 aa)
SLG_18930Putative hydrolase. (279 aa)
SLG_15360Putative hydrolase. (308 aa)
SLG_14270Conserved hypothetical protein. (343 aa)
SLG_19130Putative hydrolase. (264 aa)
SLG_19640phytanoyl-CoA dioxygenase. (304 aa)
fadJFatty oxidation complex alpha subunit; Protein synonym:3-hydroxyacyl-CoA dehydrogenase. (731 aa)
SLG_26260Conserved hypothetical protein. (302 aa)
SLG_22390Hypothetical protein. (312 aa)
SLG_27780Hypothetical protein. (141 aa)
SLG_28100Putative metal-dependent hydrolase. (292 aa)
SLG_28130Conserved hypothetical protein. (268 aa)
SLG_28580Putative fumarylacetoacetase. (429 aa)
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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