22 items (Sphingobium sp. SYK6) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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	exbB	Biopolymer transport protein ExbB. (252 aa)
	exbD	Biopolymer transport protein ExbD. (161 aa)
	exbD-2	Biopolymer transport protein ExbD. (141 aa)
	ligXd	FAD-dependent oxidoreductase; Involved in the catabolism of 5,5'-dehydrodivanillate (DDVA), an intermediate in the biodegradation of lignin. Part of a three- component monooxygenase that catalyzes the O-demethylation of DDVA, leading to the formation of 2,2',3-trihydroxy-3'-methoxy-5,5'- dicarboxybiphenyl (OH-DDVA). LigXd probably transfers the electrons from NADH to LigXc; Belongs to the FAD-dependent oxidoreductase family. (412 aa)
	SLG_27300	Putative dioxygenase. (486 aa)
	SLG_27970	Putative dioxygenase. (492 aa)
	SLG_36640	Putative dioxygenase. (490 aa)
	SLG_37540	Putative dioxygenase. (486 aa)
	SLG_38050	TonB-dependent receptor-like protein. (778 aa)
	ligY	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl meta-cleavage compound hydrolase. (332 aa)
	SLG_04460	TonB-dependent receptor-like protein. (820 aa)
	SLG_07650	TonB-dependent receptor-like protein. (965 aa)
	ligZ	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl dioxygenase. (336 aa)
	ligX	2,2'-dihydroxy-3,3'-dimethoxy-5, 5'-dicarboxybiphenyl O-demethylase oxygenase subunit; Involved in the catabolism of 5,5'-dehydrodivanillate (DDVA), an intermediate in the biodegradation of lignin. Part of a three- component monooxygenase that catalyzes the O-demethylation of DDVA, leading to the formation of 2,2',3-trihydroxy-3'-methoxy-5,5'- dicarboxybiphenyl (OH-DDVA). (424 aa)
	ligXc	Ferredoxin; Involved in the catabolism of 5,5'-dehydrodivanillate (DDVA), an intermediate in the biodegradation of lignin. Part of a three- component monooxygenase that catalyzes the O-demethylation of DDVA, leading to the formation of 2,2',3-trihydroxy-3'-methoxy-5,5'- dicarboxybiphenyl (OH-DDVA). LigXc probably functions as an intermediate electron transfer protein between LigXd and LigXa. Belongs to the adrenodoxin/putidaredoxin family. (105 aa)
	SLG_09440	Putative oxygenase. (483 aa)
	SLG_11300	Putative dioxygenase. (491 aa)
	ligC	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD. (315 aa)
	ligI	2-pyrone-4,6-dicarboxylic acid hydrolase; Contributes to the degradation of lignin at the level of the protocatechuate 4,5-cleavage pathway. Catalyzes the hydrolysis of 2-pyrone-4,6-dicarboxylate (PDC) to (4E)-oxalomesaconate (OMA). The keto form of OMA can tautomerize into the enol form, 4-carboxy-2-hydroxymuconate (CHM), under certain pH conditions. Also catalyzes the reverse reaction. Is essential for the growth of Sphingobium sp. SYK-6 on vanillate but is not responsible for the growth of this strain on syringate. Belongs to the metallo-dependent hydrolases superfamily. PDC hydrola [...] (293 aa)
	lsdA	Lignostilbene alpha,beta-dioxygenase. (491 aa)
	SLG_12860	Conserved hypothetical protein. (489 aa)
	tonB	Protein TonB. (218 aa)

Your Current Organism:

Sphingobium sp. SYK6

NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SLG_04460	SLG_38050	SLG_04460	SLG_38050	TonB-dependent receptor-like protein.	TonB-dependent receptor-like protein.	0.405
SLG_04460	tonB	SLG_04460	SLG_14430	TonB-dependent receptor-like protein.	Protein TonB.	0.428
SLG_07650	SLG_38050	SLG_07650	SLG_38050	TonB-dependent receptor-like protein.	TonB-dependent receptor-like protein.	0.763
SLG_07650	ligY	SLG_07650	SLG_07750	TonB-dependent receptor-like protein.	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl meta-cleavage compound hydrolase.	0.483
SLG_07650	ligZ	SLG_07650	SLG_07720	TonB-dependent receptor-like protein.	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl dioxygenase.	0.497
SLG_07650	tonB	SLG_07650	SLG_14430	TonB-dependent receptor-like protein.	Protein TonB.	0.433
SLG_38050	SLG_04460	SLG_38050	SLG_04460	TonB-dependent receptor-like protein.	TonB-dependent receptor-like protein.	0.405
SLG_38050	SLG_07650	SLG_38050	SLG_07650	TonB-dependent receptor-like protein.	TonB-dependent receptor-like protein.	0.763
exbB	exbD	SLG_14440	SLG_14450	Biopolymer transport protein ExbB.	Biopolymer transport protein ExbD.	0.996
exbB	exbD-2	SLG_14440	SLG_14460	Biopolymer transport protein ExbB.	Biopolymer transport protein ExbD.	0.996
exbB	tonB	SLG_14440	SLG_14430	Biopolymer transport protein ExbB.	Protein TonB.	0.973
exbD	exbB	SLG_14450	SLG_14440	Biopolymer transport protein ExbD.	Biopolymer transport protein ExbB.	0.996
exbD	exbD-2	SLG_14450	SLG_14460	Biopolymer transport protein ExbD.	Biopolymer transport protein ExbD.	0.845
exbD	tonB	SLG_14450	SLG_14430	Biopolymer transport protein ExbD.	Protein TonB.	0.954
exbD-2	exbB	SLG_14460	SLG_14440	Biopolymer transport protein ExbD.	Biopolymer transport protein ExbB.	0.996
exbD-2	exbD	SLG_14460	SLG_14450	Biopolymer transport protein ExbD.	Biopolymer transport protein ExbD.	0.845
exbD-2	tonB	SLG_14460	SLG_14430	Biopolymer transport protein ExbD.	Protein TonB.	0.919
ligC	ligI	SLG_12490	SLG_12570	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD.	2-pyrone-4,6-dicarboxylic acid hydrolase; Contributes to the degradation of lignin at the level of the protocatechuate 4,5-cleavage pathway. Catalyzes the hydrolysis of 2-pyrone-4,6-dicarboxylate (PDC) to (4E)-oxalomesaconate (OMA). The keto form of OMA can tautomerize into the enol form, 4-carboxy-2-hydroxymuconate (CHM), under certain pH conditions. Also catalyzes the reverse reaction. Is essential for the growth of Sphingobium sp. SYK-6 on vanillate but is not responsible for the growth of this strain on syringate. Belongs to the metallo-dependent hydrolases superfamily. PDC hydrola [...]	0.988
ligC	ligY	SLG_12490	SLG_07750	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD.	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl meta-cleavage compound hydrolase.	0.608
ligC	ligZ	SLG_12490	SLG_07720	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD.	2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl dioxygenase.	0.703