(11 nodes) rRNA catabolic process network (Brugia malayi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bm1_47245	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (392 aa)
	bma-crn-5	BMA-CRN-5, isoform b. (225 aa)
	Bm1_07190	BMA-EXOS-8. (276 aa)
	A0A5S6PF34	Uncharacterized protein. (77 aa)
	bma-exos-2	BMA-EXOS-2, isoform b; BMA-EXOS-2, isoform c. (295 aa)
	Bm1_13250	BMA-EXOS-7. (308 aa)
	A0A5S6PSH2	5'-3' exoribonuclease 1. (1622 aa)
	bma-mrpl-44	Bm3147. (397 aa)
	bma-exos-4.2	BMA-EXOS-4.2. (277 aa)
	Bma-exos-7	BMA-EXOS-7. (306 aa)
	bma-exos-4.1	BMA-EXOS-4.1. (249 aa)

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5S6PF34	A0A5S6PSH2	A0A5S6PF34	A0A5S6PSH2	Uncharacterized protein.	5'-3' exoribonuclease 1.	0.790
A0A5S6PF34	Bm1_07190	A0A5S6PF34	A0A0K0IQL3	Uncharacterized protein.	BMA-EXOS-8.	0.947
A0A5S6PF34	Bm1_13250	A0A5S6PF34	A0A5S6PL90	Uncharacterized protein.	BMA-EXOS-7.	0.922
A0A5S6PF34	Bma-exos-7	A0A5S6PF34	A0A0H5S0J8	Uncharacterized protein.	BMA-EXOS-7.	0.922
A0A5S6PF34	bma-crn-5	A0A5S6PF34	A0A0J9XYP4	Uncharacterized protein.	BMA-CRN-5, isoform b.	0.978
A0A5S6PF34	bma-exos-2	A0A5S6PF34	A0A0K0IZ29	Uncharacterized protein.	BMA-EXOS-2, isoform b; BMA-EXOS-2, isoform c.	0.985
A0A5S6PF34	bma-exos-4.1	A0A5S6PF34	A0A0H5S6Q3	Uncharacterized protein.	BMA-EXOS-4.1.	0.716
A0A5S6PF34	bma-exos-4.2	A0A5S6PF34	A0A0K0JMI7	Uncharacterized protein.	BMA-EXOS-4.2.	0.971
A0A5S6PSH2	A0A5S6PF34	A0A5S6PSH2	A0A5S6PF34	5'-3' exoribonuclease 1.	Uncharacterized protein.	0.790
A0A5S6PSH2	Bm1_07190	A0A5S6PSH2	A0A0K0IQL3	5'-3' exoribonuclease 1.	BMA-EXOS-8.	0.769
A0A5S6PSH2	Bm1_13250	A0A5S6PSH2	A0A5S6PL90	5'-3' exoribonuclease 1.	BMA-EXOS-7.	0.691
A0A5S6PSH2	Bm1_47245	A0A5S6PSH2	A0A0I9N7B3	5'-3' exoribonuclease 1.	Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.	0.588
A0A5S6PSH2	Bma-exos-7	A0A5S6PSH2	A0A0H5S0J8	5'-3' exoribonuclease 1.	BMA-EXOS-7.	0.691
A0A5S6PSH2	bma-crn-5	A0A5S6PSH2	A0A0J9XYP4	5'-3' exoribonuclease 1.	BMA-CRN-5, isoform b.	0.862
A0A5S6PSH2	bma-exos-2	A0A5S6PSH2	A0A0K0IZ29	5'-3' exoribonuclease 1.	BMA-EXOS-2, isoform b; BMA-EXOS-2, isoform c.	0.733
A0A5S6PSH2	bma-exos-4.1	A0A5S6PSH2	A0A0H5S6Q3	5'-3' exoribonuclease 1.	BMA-EXOS-4.1.	0.790
A0A5S6PSH2	bma-exos-4.2	A0A5S6PSH2	A0A0K0JMI7	5'-3' exoribonuclease 1.	BMA-EXOS-4.2.	0.751
A0A5S6PSH2	bma-mrpl-44	A0A5S6PSH2	A0A0K0J907	5'-3' exoribonuclease 1.	Bm3147.	0.443
Bm1_07190	A0A5S6PF34	A0A0K0IQL3	A0A5S6PF34	BMA-EXOS-8.	Uncharacterized protein.	0.947
Bm1_07190	A0A5S6PSH2	A0A0K0IQL3	A0A5S6PSH2	BMA-EXOS-8.	5'-3' exoribonuclease 1.	0.769