(85 nodes) RNA-binding domain superfamily network (Brugia malayi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bm1_10890	Immunodominant antigen homologue, putative. (798 aa)
	bma-rsp-4	BMA-RSP-4. (204 aa)
	bma-rbm-5	Bm5673. (911 aa)
	bma-trm-2a	Bm4676; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (659 aa)
	Bma-spn-4	BMA-SPN-4, isoform a; BMA-SPN-4, isoform b. (418 aa)
	bma-nifk-1	Bm5527. (205 aa)
	bma-eif-3.g	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (288 aa)
	bma-hrp-2	BMA-HRP-2, isoform a. (709 aa)
	Bm1_27610	Bm2262, isoform a; Bm2262, isoform b. (507 aa)
	Bm1_33370	Bm2057. (903 aa)
	bma-rsp-8	Bm2855, isoform c; Bm2855, isoform d. (242 aa)
	Bm1	Bm1. (165 aa)
	bma-hrp-1.2	Bm4012, isoform b. (340 aa)
	Bm7293	Bm7293, isoform b; Bm7293, isoform c. (277 aa)
	Bm1_08615	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (287 aa)
	Bm1_56100	Bm12845, isoform a; Bm12845, isoform b. (247 aa)
	Bm1_29600	Bm11036. (340 aa)
	bma-acin-1	BMA-ACIN-1, isoform b. (661 aa)
	Bm1_19325	Bm10327. (219 aa)
	bma-dnj-22	BMA-DNJ-22. (296 aa)
	Bm1_13365	Bm12801. (331 aa)
	bma-hrpf-1	BMA-HRPF-1. (369 aa)
	bma-slrp-1.1	Bm14694. (105 aa)
	bma-sart-3	Bm1694, isoform b. (181 aa)
	bma-cpb-3	BMA-CPB-3. (611 aa)
	Bma-tiar-3	BMA-TIAR-3. (315 aa)
	Bma-alkb-8	BMA-ALKB-8. (576 aa)
	Bm2230	Bm2230. (650 aa)
	Bm1_04590	Bm2355. (509 aa)
	Bm1_22185	Bm2762, isoform a; Bm2762, isoform b. (445 aa)
	Bma-tdp-1	BMA-TDP-1. (478 aa)
	bm-rbp-1	Putative RNA binding protein. (82 aa)
	Bm1_36780	Bm4547. (373 aa)
	Bm1_31130	Bm4683. (401 aa)
	bma-rnp-5	BMA-RNP-5. (296 aa)
	Bm1_37765	Bm4907. (223 aa)
	bma-rnp-4	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (159 aa)
	bma-larp-5	BMA-LARP-5. (618 aa)
	bma-sna-2	BMA-SNA-2. (713 aa)
	bma-lem-2	BMA-LEM-2. (524 aa)
	bma-rbm-7	Bm6389. (137 aa)
	bma-rbm-12	Bm7255, isoform a; Bm7255, isoform b. (972 aa)
	bma-cyn-13	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (321 aa)
	Bm1_55710	BMA-UAF-2. (248 aa)
	Bm7569	Bm7569. (484 aa)
	Bm1_14275	Bm8919. (200 aa)
	Bm9024	Bm9024. (309 aa)
	Bm1_38325	Bm9635, isoform a; Bm9635, isoform b. (228 aa)
	bma-cpf-2	BMA-CPF-2, isoform b; BMA-CPF-2, isoform c. (334 aa)
	bma-rnp-6	BMA-RNP-6, isoform a; BMA-RNP-6, isoform e. (728 aa)
	Bma-etr-1	BMA-ETR-1, isoform f. (527 aa)
	Bm9909	Bm9909, isoform c. (327 aa)
	Bma-sig-7	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (431 aa)
	Bma-rnp-7	BMA-RNP-7, isoform b; BMA-RNP-7, isoform c. (302 aa)
	Bma-npp-19	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (333 aa)
	Bm1_54890	Bm5954, isoform f; Bm5954, isoform g. (870 aa)
	Bm1_40380	BMA-TAG-262, isoform b. (344 aa)
	Bm1_16080	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (655 aa)
	Bm7882	Bm7882, isoform b. (490 aa)
	bma-nono-1	Bm3567, isoform a. (563 aa)
	bma-tdp-1.2	Bm4095. (408 aa)
	bma-drr-2	Bm5742. (216 aa)
	bma-smg-4	BMA-SMG-4. (455 aa)
	bma-cus-2	Bm6969, isoform a; Bm6969, isoform c. (443 aa)
	Bm1_42820	Uncharacterized protein. (403 aa)
	A0A5S6P897	Uncharacterized protein. (585 aa)
	A0A5S6PD69	Uncharacterized protein. (237 aa)
	A0A5S6PDV1	Uncharacterized protein. (249 aa)
	Bm1_46055	Bm1759. (866 aa)
	A0A5S6PF90	Uncharacterized protein. (674 aa)
	A0A5S6PG98	BMA-TIAR-3. (170 aa)
	Bm1_17050	BMA-ALKB-8. (548 aa)
	Bm1_49935	BMA-FUST-1, isoform d; BMA-FUST-1, isoform f. (563 aa)
	A0A5S6PI10	Uncharacterized protein. (133 aa)
	A0A5S6PIH4	BMA-ACIN-1, isoform c. (758 aa)
	A0A5S6PJ23	Uncharacterized protein. (395 aa)
	A0A5S6PJF2	Uncharacterized protein. (581 aa)
	A0A5S6PKX3	Bm3751. (908 aa)
	A0A5S6PLC5	Bm3751. (722 aa)
	A0A5S6PM69	BMA-TDP-1. (470 aa)
	A0A5S6PPF1	Bm5236. (588 aa)
	A0A5S6PPJ3	Bm5236. (551 aa)
	Bm1_13240	BMA-SUP-12. (370 aa)
	Bm1_40975	Uncharacterized protein. (315 aa)
	Bm1_56185	Bm9082, isoform a. (392 aa)

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5S6P897	A0A5S6PD69	A0A5S6P897	A0A5S6PD69	Uncharacterized protein.	Uncharacterized protein.	0.622
A0A5S6P897	A0A5S6PDV1	A0A5S6P897	A0A5S6PDV1	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A5S6P897	A0A5S6PG98	A0A5S6P897	A0A5S6PG98	Uncharacterized protein.	BMA-TIAR-3.	0.599
A0A5S6P897	A0A5S6PI10	A0A5S6P897	A0A5S6PI10	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A5S6P897	A0A5S6PJ23	A0A5S6P897	A0A5S6PJ23	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A5S6P897	A0A5S6PJF2	A0A5S6P897	A0A5S6PJF2	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A5S6P897	A0A5S6PKX3	A0A5S6P897	A0A5S6PKX3	Uncharacterized protein.	Bm3751.	0.448
A0A5S6P897	A0A5S6PLC5	A0A5S6P897	A0A5S6PLC5	Uncharacterized protein.	Bm3751.	0.448
A0A5S6P897	A0A5S6PM69	A0A5S6P897	A0A5S6PM69	Uncharacterized protein.	BMA-TDP-1.	0.604
A0A5S6P897	Bm1_04590	A0A5S6P897	A0A0K0J5K4	Uncharacterized protein.	Bm2355.	0.746
A0A5S6P897	Bm1_10890	A0A5S6P897	A0A5S6PXE2	Uncharacterized protein.	Immunodominant antigen homologue, putative.	0.448
A0A5S6P897	Bm1_13365	A0A5S6P897	A0A0K0IVU7	Uncharacterized protein.	Bm12801.	0.471
A0A5S6P897	Bm1_19325	A0A5S6P897	A0A0K0IMV8	Uncharacterized protein.	Bm10327.	0.665
A0A5S6P897	Bm1_29600	A0A5S6P897	A0A0J9Y823	Uncharacterized protein.	Bm11036.	0.648
A0A5S6P897	Bm1_31130	A0A5S6P897	A0A0K0JFQ1	Uncharacterized protein.	Bm4683.	0.448
A0A5S6P897	Bm1_38325	A0A5S6P897	A0A0K0JZZ0	Uncharacterized protein.	Bm9635, isoform a; Bm9635, isoform b.	0.622
A0A5S6P897	Bm1_42820	A0A5S6P897	A0A5S6P7F1	Uncharacterized protein.	Uncharacterized protein.	0.604
A0A5S6P897	Bm1_49935	A0A5S6P897	A0A5S6PHP1	Uncharacterized protein.	BMA-FUST-1, isoform d; BMA-FUST-1, isoform f.	0.475
A0A5S6P897	Bm1_55710	A0A5S6P897	A0A0K0JRV4	Uncharacterized protein.	BMA-UAF-2.	0.501
A0A5S6P897	Bm1_56100	A0A5S6P897	A0A0J9Y4H7	Uncharacterized protein.	Bm12845, isoform a; Bm12845, isoform b.	0.501