5 items (Brugia malayi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Bm1_26085	Bm10748; Belongs to the protein kinase superfamily. (392 aa)
	Bm1_41860	Bm6745. (302 aa)
	bma-pmk-3	BMA-PMK-3, isoform c. (293 aa)
	Bm1_31785	Mitogen-activated protein kinase. (369 aa)
	Bm1_54210	Uncharacterized protein. (128 aa)

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bm1_26085	Bm1_31785	A0A0H5SPB0	A0A0K0J2R4	Bm10748; Belongs to the protein kinase superfamily.	Mitogen-activated protein kinase.	0.520
Bm1_26085	Bm1_54210	A0A0H5SPB0	A0A5S6PA72	Bm10748; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.745
Bm1_26085	bma-pmk-3	A0A0H5SPB0	A0A0J9XMY9	Bm10748; Belongs to the protein kinase superfamily.	BMA-PMK-3, isoform c.	0.618
Bm1_31785	Bm1_26085	A0A0K0J2R4	A0A0H5SPB0	Mitogen-activated protein kinase.	Bm10748; Belongs to the protein kinase superfamily.	0.520
Bm1_31785	Bm1_54210	A0A0K0J2R4	A0A5S6PA72	Mitogen-activated protein kinase.	Uncharacterized protein.	0.427
Bm1_31785	bma-pmk-3	A0A0K0J2R4	A0A0J9XMY9	Mitogen-activated protein kinase.	BMA-PMK-3, isoform c.	0.910
Bm1_41860	Bm1_54210	A0A0I9NBJ5	A0A5S6PA72	Bm6745.	Uncharacterized protein.	0.704
Bm1_54210	Bm1_26085	A0A5S6PA72	A0A0H5SPB0	Uncharacterized protein.	Bm10748; Belongs to the protein kinase superfamily.	0.745
Bm1_54210	Bm1_31785	A0A5S6PA72	A0A0K0J2R4	Uncharacterized protein.	Mitogen-activated protein kinase.	0.427
Bm1_54210	Bm1_41860	A0A5S6PA72	A0A0I9NBJ5	Uncharacterized protein.	Bm6745.	0.704
Bm1_54210	bma-pmk-3	A0A5S6PA72	A0A0J9XMY9	Uncharacterized protein.	BMA-PMK-3, isoform c.	0.427
bma-pmk-3	Bm1_26085	A0A0J9XMY9	A0A0H5SPB0	BMA-PMK-3, isoform c.	Bm10748; Belongs to the protein kinase superfamily.	0.618
bma-pmk-3	Bm1_31785	A0A0J9XMY9	A0A0K0J2R4	BMA-PMK-3, isoform c.	Mitogen-activated protein kinase.	0.910
bma-pmk-3	Bm1_54210	A0A0J9XMY9	A0A5S6PA72	BMA-PMK-3, isoform c.	Uncharacterized protein.	0.427