42 items (Brugia malayi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bma-csn-6	BMA-CSN-6. (320 aa)
	bma-sel-13	Bm5531, isoform a; Bm8175; Bm8177. (180 aa)
	bma-ama-1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1870 aa)
	bma-uvs-1	Bm7543. (603 aa)
	bma-cyh-1	BMA-CYH-1. (320 aa)
	bma-xpa-1	BMA-XPA-1. (246 aa)
	Bm9060	Bm9060. (444 aa)
	Bm7120	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (483 aa)
	Bm12922	Bm12922. (1106 aa)
	bma-xpb-1	Bm13812, isoform a; Bm13812, isoform b. (798 aa)
	bma-gtf-2h3	Bm7634, isoform b; Bm7634, isoform c. (274 aa)
	bma-csn-1	BMA-CSN-1, isoform b; BMA-CSN-1, isoform c. (405 aa)
	bma-rpb-6	BMA-RPB-6, isoform a; BMA-RPB-6, isoform b. (174 aa)
	bma-csn-2	BMA-CSN-2. (438 aa)
	bma-rbx-1	BMA-RBX-1. (117 aa)
	bma-csn-3	BMA-CSN-3. (465 aa)
	Bm1_17445	Bm13690. (500 aa)
	bma-syf-1	Bm13935. (864 aa)
	bma-gtf-2h2c	General transcription factor IIH subunit. (382 aa)
	bma-rpb-5	BMA-RPB-5. (211 aa)
	Bm1_26995	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	bma-rpb-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1171 aa)
	bma-rpb-12	BMA-RPB-12. (63 aa)
	bma-cul-4	BMA-CUL-4; Belongs to the cullin family. (888 aa)
	bma-rpb-7	BMA-RPB-7. (174 aa)
	Bma-emb-4	BMA-EMB-4. (1440 aa)
	bma-cyn-13	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (321 aa)
	Bma-csn-5	BMA-CSN-5, isoform d. (357 aa)
	Bma-ubq-1	BMA-UBQ-1, isoform a; BMA-UBQ-1, isoform e. (372 aa)
	Bm1_38125	BMA-MATH-33, isoform m; Belongs to the peptidase C19 family. (1172 aa)
	Bma-ddb-1	BMA-DDB-1, isoform e; BMA-DDB-1, isoform h. (1146 aa)
	Bm1_17615	Bm5993, isoform b. (305 aa)
	Bma-csn-4	BMA-CSN-4, isoform e; BMA-CSN-4, isoform g. (472 aa)
	Bm1_52995	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	A0A5S6P9F0	Uncharacterized protein. (268 aa)
	A0A5S6P9J5	Bm12922. (1000 aa)
	Bm1_54210	Uncharacterized protein. (128 aa)
	A0A5S6PCR4	Uncharacterized protein. (93 aa)
	A0A5S6PFK8	BMA-CSN-5, isoform d. (348 aa)
	Bm1_48135	Uncharacterized protein. (147 aa)
	Bm1_34795	Bm5177, isoform a. (608 aa)
	A0A5S6PTZ8	Bm6839, isoform b. (79 aa)

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5S6P9F0	A0A5S6PCR4	A0A5S6P9F0	A0A5S6PCR4	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A5S6P9F0	Bm1_17615	A0A5S6P9F0	A0A1P6C6E2	Uncharacterized protein.	Bm5993, isoform b.	0.652
A0A5S6P9F0	Bm1_26995	A0A5S6P9F0	A0A0K0J039	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.770
A0A5S6P9F0	Bm1_34795	A0A5S6P9F0	A0A5S6PPR5	Uncharacterized protein.	Bm5177, isoform a.	0.422
A0A5S6P9F0	Bm1_38125	A0A5S6P9F0	A0A1P6C2T1	Uncharacterized protein.	BMA-MATH-33, isoform m; Belongs to the peptidase C19 family.	0.428
A0A5S6P9F0	Bm1_48135	A0A5S6P9F0	A0A5S6PFL6	Uncharacterized protein.	Uncharacterized protein.	0.947
A0A5S6P9F0	Bm1_52995	A0A5S6P9F0	A0A1P6CBC0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.855
A0A5S6P9F0	Bm1_54210	A0A5S6P9F0	A0A5S6PA72	Uncharacterized protein.	Uncharacterized protein.	0.615
A0A5S6P9F0	Bm7120	A0A5S6P9F0	A0A0H5SQX9	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.462
A0A5S6P9F0	Bm9060	A0A5S6P9F0	A0A0H5SH56	Uncharacterized protein.	Bm9060.	0.559
A0A5S6P9F0	Bma-csn-4	A0A5S6P9F0	A0A1P6C9C2	Uncharacterized protein.	BMA-CSN-4, isoform e; BMA-CSN-4, isoform g.	0.482
A0A5S6P9F0	Bma-ddb-1	A0A5S6P9F0	A0A1P6C4B3	Uncharacterized protein.	BMA-DDB-1, isoform e; BMA-DDB-1, isoform h.	0.775
A0A5S6P9F0	Bma-ubq-1	A0A5S6P9F0	A0A1P6BY67	Uncharacterized protein.	BMA-UBQ-1, isoform a; BMA-UBQ-1, isoform e.	0.638
A0A5S6P9F0	bma-ama-1	A0A5S6P9F0	A0A0H5S9G0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.847
A0A5S6P9F0	bma-csn-2	A0A5S6P9F0	A0A0J9Y8E3	Uncharacterized protein.	BMA-CSN-2.	0.421
A0A5S6P9F0	bma-csn-3	A0A5S6P9F0	A0A0K0IN04	Uncharacterized protein.	BMA-CSN-3.	0.482
A0A5S6P9F0	bma-cul-4	A0A5S6P9F0	A0A0K0JD86	Uncharacterized protein.	BMA-CUL-4; Belongs to the cullin family.	0.665
A0A5S6P9F0	bma-cyh-1	A0A5S6P9F0	A0A0H5SDL0	Uncharacterized protein.	BMA-CYH-1.	0.504
A0A5S6P9F0	bma-gtf-2h2c	A0A5S6P9F0	A0A0K0IZU1	Uncharacterized protein.	General transcription factor IIH subunit.	0.546
A0A5S6P9F0	bma-gtf-2h3	A0A5S6P9F0	A0A0J9XZK0	Uncharacterized protein.	Bm7634, isoform b; Bm7634, isoform c.	0.513