50 items (Brugia malayi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bma-rpb-6	BMA-RPB-6, isoform a; BMA-RPB-6, isoform b. (174 aa)
	Bm1_04690	Bm4201, isoform b. (295 aa)
	bma-rpb-5	BMA-RPB-5. (211 aa)
	Bm1_26995	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (149 aa)
	Bm14072	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
	bma-rpb-2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1171 aa)
	Bm3393	Bm3393. (772 aa)
	bma-rpb-12	BMA-RPB-12. (63 aa)
	bma-snpc-4	Bm3775. (1059 aa)
	Bm1_33765	Bm5302. (466 aa)
	bma-ints-4	Bm6175, isoform a. (936 aa)
	Bma-snpc-3.4	BMA-SNPC-3.4. (453 aa)
	bma-rpb-7	BMA-RPB-7. (174 aa)
	A0A5S6PKL4	Bm3451, isoform c. (635 aa)
	bma-ints-1	Bm9787. (1760 aa)
	A0A5S6PK91	Bm3393. (424 aa)
	Bm1_34890	DEAD/H, putative. (875 aa)
	A0A5S6PJB0	Bm3011. (850 aa)
	A0A5S6PJ40	Uncharacterized protein. (565 aa)
	A0A5S6PIY1	Bm3011. (856 aa)
	A0A5S6PFW1	BMA-CIDS-1. (299 aa)
	A0A5S6PCJ9	Uncharacterized protein. (76 aa)
	bma-pqn-51	BMA-PQN-51, isoform a; BMA-PQN-51, isoform b. (405 aa)
	Bm9944	Bm9944, isoform c. (646 aa)
	Bm1_52995	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	Bm7341	POU domain protein. (792 aa)
	Bm5178	Bm5178, isoform a. (816 aa)
	Bm3810	Bm3810, isoform h; Bm3810, isoform i. (173 aa)
	Bm6022	Bm6022, isoform b. (819 aa)
	Bm1_30730	Bm9789. (1018 aa)
	A0A5S6PPC4	Bm5213. (552 aa)
	Bm1_50345	BMA-CCNK-1. (245 aa)
	Bm1_49130	Bm3810, isoform h; Bm3810, isoform i. (794 aa)
	Bm1_47705	Uncharacterized protein. (616 aa)
	A0A5S6PPG8	Bm5213. (764 aa)
	bma-cdk-9	BMA-CDK-9; Belongs to the protein kinase superfamily. (424 aa)
	Bm8815	Bm8815. (444 aa)
	Bm1_54785	Bm3255. (589 aa)
	Bm6718	Bm6718. (551 aa)
	bma-ama-1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1870 aa)
	Bm1_40655	Bm10932. (443 aa)
	bma-ints-5	Bm10867. (1065 aa)
	Bma-cids-1	BMA-CIDS-1. (372 aa)
	bma-gtf-2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (294 aa)
	bma-taf-13	BMA-TAF-13. (121 aa)
	Bm1_51570	Bm5460, isoform b. (572 aa)
	bma-spt-4	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (119 aa)
	bma-ceh-18.1	POU domain protein. (879 aa)
	bma-tbp-1	BMA-TBP-1, isoform b. (347 aa)
	bma-taf-8	BMA-TAF-8, isoform a; BMA-TAF-8, isoform c. (340 aa)

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5S6PCJ9	A0A5S6PIY1	A0A5S6PCJ9	A0A5S6PIY1	Uncharacterized protein.	Bm3011.	0.757
A0A5S6PCJ9	A0A5S6PJB0	A0A5S6PCJ9	A0A5S6PJB0	Uncharacterized protein.	Bm3011.	0.757
A0A5S6PCJ9	A0A5S6PKL4	A0A5S6PCJ9	A0A5S6PKL4	Uncharacterized protein.	Bm3451, isoform c.	0.879
A0A5S6PCJ9	Bm1_26995	A0A5S6PCJ9	A0A0K0J039	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.764
A0A5S6PCJ9	Bm1_30730	A0A5S6PCJ9	A0A0K0K0H3	Uncharacterized protein.	Bm9789.	0.880
A0A5S6PCJ9	Bm1_40655	A0A5S6PCJ9	A0A0H5SD02	Uncharacterized protein.	Bm10932.	0.805
A0A5S6PCJ9	Bm1_51570	A0A5S6PCJ9	A0A0J9XVB1	Uncharacterized protein.	Bm5460, isoform b.	0.625
A0A5S6PCJ9	Bm1_52995	A0A5S6PCJ9	A0A1P6CBC0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.710
A0A5S6PCJ9	Bm1_54785	A0A5S6PCJ9	A0A0H5S3Y7	Uncharacterized protein.	Bm3255.	0.886
A0A5S6PCJ9	Bm5178	A0A5S6PCJ9	A0A1P6C3L9	Uncharacterized protein.	Bm5178, isoform a.	0.873
A0A5S6PCJ9	Bm6022	A0A5S6PCJ9	A0A158Q0S0	Uncharacterized protein.	Bm6022, isoform b.	0.620
A0A5S6PCJ9	Bm6718	A0A5S6PCJ9	A0A0H5S556	Uncharacterized protein.	Bm6718.	0.625
A0A5S6PCJ9	Bm8815	A0A5S6PCJ9	A0A0H5S3R5	Uncharacterized protein.	Bm8815.	0.690
A0A5S6PCJ9	Bm9944	A0A5S6PCJ9	A0A1U7F130	Uncharacterized protein.	Bm9944, isoform c.	0.625
A0A5S6PCJ9	bma-ama-1	A0A5S6PCJ9	A0A0H5S9G0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.714
A0A5S6PCJ9	bma-ints-1	A0A5S6PCJ9	A0A0K0K0H1	Uncharacterized protein.	Bm9787.	0.883
A0A5S6PCJ9	bma-ints-4	A0A5S6PCJ9	A0A0K0JM02	Uncharacterized protein.	Bm6175, isoform a.	0.881
A0A5S6PCJ9	bma-ints-5	A0A5S6PCJ9	A0A0H5SQ58	Uncharacterized protein.	Bm10867.	0.694
A0A5S6PCJ9	bma-rpb-12	A0A5S6PCJ9	A0A0K0JAQ0	Uncharacterized protein.	BMA-RPB-12.	0.716
A0A5S6PCJ9	bma-rpb-2	A0A5S6PCJ9	A0A0K0J5T8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.764