(20 nodes) Nuclear periphery network (Trema orientale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2P5BNS1	Anaphase-promoting complex subunit. (772 aa)
	A0A2P5BR07	Brix domain-containing protein. (81 aa)
	A0A2P5BSV8	Inner nuclear membrane protein MAN. (387 aa)
	A0A2P5C682	Sodium/calcium exchanger membrane region; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (546 aa)
	A0A2P5CD44	MAR-binding filament-like protein. (720 aa)
	A0A2P5CFY6	Eukaryotic rRNA processing. (307 aa)
	A0A2P5EAK1	Uncharacterized protein. (1354 aa)
	A0A2P5EDF9	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (989 aa)
	A0A2P5EGU0	WPP domain containing protein. (170 aa)
	A0A2P5EIQ2	Uncharacterized protein. (172 aa)
	A0A2P5EIR6	Poly(ADP-ribose) polymerase, catalytic domain containing protein. (78 aa)
	A0A2P5FX13	SAC3/GANP/THP. (1600 aa)
	A0A2P5EIT1	Poly(ADP-ribose) polymerase. (619 aa)
	A0A2P5EKC5	Uncharacterized protein. (108 aa)
	A0A2P5EMM9	Eukaryotic rRNA processing. (303 aa)
	A0A2P5F6W5	Protein CROWDED NUCLEI. (1213 aa)
	A0A2P5FUD5	Structural maintenance of chromosomes protein. (1299 aa)
	A0A2P5AXJ9	Anaphase-promoting complex subunit. (219 aa)
	A0A2P5AXM2	Anaphase-promoting complex subunit. (275 aa)
	A0A2P5AXN9	Uncharacterized protein. (51 aa)

Your Current Organism:

Trema orientale

NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2P5AXJ9	A0A2P5AXM2	Anaphase-promoting complex subunit.	Anaphase-promoting complex subunit.	0.585
A0A2P5AXM2	A0A2P5AXJ9	Anaphase-promoting complex subunit.	Anaphase-promoting complex subunit.	0.585
A0A2P5BR07	A0A2P5CFY6	Brix domain-containing protein.	Eukaryotic rRNA processing.	0.930
A0A2P5BR07	A0A2P5EMM9	Brix domain-containing protein.	Eukaryotic rRNA processing.	0.930
A0A2P5CFY6	A0A2P5BR07	Eukaryotic rRNA processing.	Brix domain-containing protein.	0.930
A0A2P5EAK1	A0A2P5F6W5	Uncharacterized protein.	Protein CROWDED NUCLEI.	0.582
A0A2P5EAK1	A0A2P5FX13	Uncharacterized protein.	SAC3/GANP/THP.	0.476
A0A2P5EMM9	A0A2P5BR07	Eukaryotic rRNA processing.	Brix domain-containing protein.	0.930
A0A2P5F6W5	A0A2P5EAK1	Protein CROWDED NUCLEI.	Uncharacterized protein.	0.582
A0A2P5FX13	A0A2P5EAK1	SAC3/GANP/THP.	Uncharacterized protein.	0.476