(78 nodes) Regulation of protein catabolic process network (Trema orientale)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A2P5BII9	Cdk-activating kinase assembly factor. (364 aa)
	A0A2P5ADP8	26S proteasome subunit P; Belongs to the AAA ATPase family. (420 aa)
	A0A2P5AEY4	RBR-type E3 ubiquitin transferase. (319 aa)
	A0A2P5AEY7	RBR-type E3 ubiquitin transferase. (485 aa)
	A0A2P5AEZ1	E3 ubiquitin ligase RBR family. (299 aa)
	A0A2P5AK69	RBR-type E3 ubiquitin transferase. (354 aa)
	A0A2P5ASZ1	RBR-type E3 ubiquitin transferase. (705 aa)
	A0A2P5AT00	Valine-tRNA ligase. (103 aa)
	A0A2P5AT07	RBR-type E3 ubiquitin transferase. (327 aa)
	A0A2P5AYG4	26S proteasome subunit P; Belongs to the AAA ATPase family. (418 aa)
	A0A2P5B4F2	RBR-type E3 ubiquitin transferase. (603 aa)
	A0A2P5BBL6	Cdk-activating kinase assembly factor. (483 aa)
	A0A2P5BG19	26S proteasome regulatory subunit. (115 aa)
	A0A2P5BHB5	The fantastic four family. (298 aa)
	A0A2P5BTH4	26S proteasome subunit P; Belongs to the AAA ATPase family. (423 aa)
	A0A2P5BTN1	26S proteasome subunit P; Belongs to the AAA ATPase family. (423 aa)
	A0A2P5BUC9	Uncharacterized protein. (201 aa)
	A0A2P5BWA1	Stress-induced protein. (77 aa)
	A0A2P5C376	26S proteasome subunit P; Belongs to the AAA ATPase family. (445 aa)
	A0A2P5CB53	F-box domain containing protein. (448 aa)
	A0A2P5CBC3	F-box domain containing protein. (387 aa)
	A0A2P5CCH5	Uncharacterized protein. (205 aa)
	A0A2P5CCJ7	F-box domain containing protein. (395 aa)
	A0A2P5CCR9	F-box domain containing protein. (396 aa)
	A0A2P5CJ10	Guanine nucleotide-binding protein, beta subunit. (477 aa)
	A0A2P5CLW6	RBR-type E3 ubiquitin transferase. (516 aa)
	A0A2P5CSP1	Guanine nucleotide-binding protein, beta subunit. (503 aa)
	A0A2P5D6R6	Development/cell death domain containing protein. (371 aa)
	A0A2P5DFV1	F-box associated domain. (305 aa)
	A0A2P5DFW2	Ubiquitin ligase domain containing protein. (173 aa)
	A0A2P5DI40	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (999 aa)
	A0A2P5DRE9	TNF receptor-associated factor. (398 aa)
	A0A2P5DVU4	Spastin; Belongs to the AAA ATPase family. (370 aa)
	A0A2P5DYB7	26S proteasome subunit P; Belongs to the AAA ATPase family. (617 aa)
	A0A2P5DYC1	E3 ubiquitin ligase RBR family. (278 aa)
	A0A2P5DYC2	RBR-type E3 ubiquitin transferase. (284 aa)
	A0A2P5DYD9	RBR-type E3 ubiquitin transferase. (203 aa)
	A0A2P5DYE5	RBR-type E3 ubiquitin transferase. (190 aa)
	A0A2P5DYG6	RBR-type E3 ubiquitin transferase. (267 aa)
	A0A2P5DZJ8	De-etiolated protein 1, Det. (527 aa)
	A0A2P5E8X9	Guanine nucleotide-binding protein, beta subunit. (457 aa)
	A0A2P5EC09	Winged helix-turn-helix DNA-binding domain containing protein. (487 aa)
	A0A2P5EHF4	F-box domain containing protein. (392 aa)
	A0A2P5EIY2	The fantastic four family. (322 aa)
	A0A2P5EKP3	Nucleotide-sugar transporter. (332 aa)
	A0A2P5EKT2	Uncharacterized protein. (130 aa)
	A0A2P5EKT7	PITH domain containing protein. (204 aa)
	A0A2P5EM21	Membralin. (368 aa)
	A0A2P5EM70	Uncharacterized protein. (160 aa)
	A0A2P5EPK0	Uncharacterized protein. (220 aa)
	A0A2P5EPM0	RBR-type E3 ubiquitin transferase. (690 aa)
	A0A2P5ESC1	TATA element modulatory factor 1 DNA binding. (991 aa)
	A0A2P5ETA0	FAM192A/Fyv6, N-terminal. (212 aa)
	A0A2P5ETT7	RBR-type E3 ubiquitin transferase. (545 aa)
	A0A2P5EW95	Guanine nucleotide-binding protein, beta subunit. (408 aa)
	A0A2P5EWN7	Winged helix-turn-helix DNA-binding domain containing protein. (489 aa)
	A0A2P5EZJ6	26S proteasome subunit P; Belongs to the AAA ATPase family. (398 aa)
	A0A2P5F0J1	Spastin; Belongs to the AAA ATPase family. (556 aa)
	A0A2P5F3U6	Guanine nucleotide-binding protein, beta subunit. (457 aa)
	A0A2P5F405	RBR-type E3 ubiquitin transferase. (332 aa)
	A0A2P5FC42	Development/cell death domain containing protein. (305 aa)
	A0A2P5FD59	F-box domain containing protein. (409 aa)
	A0A2P5FD78	FIST C domain containing protein. (285 aa)
	A0A2P5FD88	F-box domain containing protein. (268 aa)
	A0A2P5FD93	F-box associated domain. (385 aa)
	A0A2P5FE97	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (489 aa)
	A0A2P5FEY3	26S proteasome subunit P; Belongs to the AAA ATPase family. (417 aa)
	A0A2P5FGW4	Guanine nucleotide-binding protein, beta subunit. (454 aa)
	A0A2P5FIW5	Mitochondrial biogenesis protein AIM. (281 aa)
	A0A2P5FIZ0	Ubiquitin ligase, Det1/DDB1-complexing. (69 aa)
	A0A2P5FJI3	ATPase, AAA-type, core. (448 aa)
	A0A2P5FRK9	E3 ubiquitin ligase RBR family. (2575 aa)
	A0A2P5FSA6	F-box domain containing protein. (398 aa)
	A0A2P5FTK8	RBR-type E3 ubiquitin transferase. (513 aa)
	A0A2P5FU31	Alpha/beta hydrolase fold. (223 aa)
	A0A2P5FZH1	RBR-type E3 ubiquitin transferase. (584 aa)
	A0A2P5FZH9	RBR-type E3 ubiquitin transferase. (558 aa)
	A0A2P5FZI0	Uncharacterized protein. (474 aa)

Your Current Organism:

Trema orientale

NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2P5ADP8	A0A2P5AYG4	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.998
A0A2P5ADP8	A0A2P5BG19	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit.	0.988
A0A2P5ADP8	A0A2P5BTH4	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.997
A0A2P5ADP8	A0A2P5BTN1	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.997
A0A2P5ADP8	A0A2P5C376	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.997
A0A2P5ADP8	A0A2P5CJ10	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539
A0A2P5ADP8	A0A2P5CSP1	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539
A0A2P5ADP8	A0A2P5DI40	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.991
A0A2P5ADP8	A0A2P5DVU4	26S proteasome subunit P; Belongs to the AAA ATPase family.	Spastin; Belongs to the AAA ATPase family.	0.977
A0A2P5ADP8	A0A2P5DYB7	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.999
A0A2P5ADP8	A0A2P5E8X9	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539
A0A2P5ADP8	A0A2P5EC09	26S proteasome subunit P; Belongs to the AAA ATPase family.	Winged helix-turn-helix DNA-binding domain containing protein.	0.988
A0A2P5ADP8	A0A2P5EW95	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539
A0A2P5ADP8	A0A2P5EWN7	26S proteasome subunit P; Belongs to the AAA ATPase family.	Winged helix-turn-helix DNA-binding domain containing protein.	0.988
A0A2P5ADP8	A0A2P5EZJ6	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.977
A0A2P5ADP8	A0A2P5F0J1	26S proteasome subunit P; Belongs to the AAA ATPase family.	Spastin; Belongs to the AAA ATPase family.	0.649
A0A2P5ADP8	A0A2P5F3U6	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539
A0A2P5ADP8	A0A2P5FE97	26S proteasome subunit P; Belongs to the AAA ATPase family.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.990
A0A2P5ADP8	A0A2P5FEY3	26S proteasome subunit P; Belongs to the AAA ATPase family.	26S proteasome subunit P; Belongs to the AAA ATPase family.	0.998
A0A2P5ADP8	A0A2P5FGW4	26S proteasome subunit P; Belongs to the AAA ATPase family.	Guanine nucleotide-binding protein, beta subunit.	0.539