(23 nodes) Mostly uncharacterized, incl. Single-species biofilm formation on inanimate substrate, and Peptidoglycan binding network (Yersinia intermedia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ydgH_1	Hypothetical protein. (87 aa)
	CH53_1321	Hypothetical protein; Opacity-associated A N-terminal motif family protein. (260 aa)
	CH53_1363	Hypothetical protein. (114 aa)
	yjdC	HTH-type transcriptional regulator yjdC. (191 aa)
	damX	Sporulation related domain protein; Non-essential cell division protein. (335 aa)
	uspB	Universal stress protein B. (111 aa)
	CH53_1890	Hypothetical protein. (201 aa)
	CH53_2023	yhhN-like family protein. (208 aa)
	yhhK	Acetyltransferase domain protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family. (130 aa)
	CH53_206	Bacterial sensory transduction regulator family protein. (161 aa)
	CH53_263	yejG-like family protein. (115 aa)
	CH53_2858	Hypothetical protein. (192 aa)
	hha	Hemolysin expression-modulating protein. (67 aa)
	tomB	Biofilm formation regulator YbaJ family protein. (122 aa)
	CH53_3150	cyd_oper_ybgE: cyd operon protein YbgE. (97 aa)
	CH53_3619	Hypothetical protein. (74 aa)
	CH53_3759	Hypothetical protein. (90 aa)
	yecM	Protein yecM. (186 aa)
	yciU	Hypothetical protein; Belongs to the UPF0263 family. (107 aa)
	yciC	Hypothetical protein. (255 aa)
	tus	DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family. (310 aa)
	ydgH	Protein ydgH. (317 aa)
	mliC	Membrane-bound lysozyme-inhibitor of c-type lysozyme family protein. (105 aa)

Your Current Organism:

Yersinia intermedia

NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CH53_1321	CH53_1363	CH53_1321	CH53_1363	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.587
CH53_1321	CH53_1890	CH53_1321	CH53_1890	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.658
CH53_1321	CH53_2023	CH53_1321	CH53_2023	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	yhhN-like family protein.	0.694
CH53_1321	CH53_206	CH53_1321	CH53_206	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Bacterial sensory transduction regulator family protein.	0.657
CH53_1321	CH53_263	CH53_1321	CH53_263	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	yejG-like family protein.	0.745
CH53_1321	CH53_2858	CH53_1321	CH53_2858	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.695
CH53_1321	CH53_3150	CH53_1321	CH53_3150	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	cyd_oper_ybgE: cyd operon protein YbgE.	0.773
CH53_1321	CH53_3619	CH53_1321	CH53_3619	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.652
CH53_1321	CH53_3759	CH53_1321	CH53_3759	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.643
CH53_1321	damX	CH53_1321	CH53_1541	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Sporulation related domain protein; Non-essential cell division protein.	0.702
CH53_1321	tomB	CH53_1321	CH53_2882	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Biofilm formation regulator YbaJ family protein.	0.758
CH53_1321	tus	CH53_1321	CH53_3962	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.	0.622
CH53_1321	uspB	CH53_1321	CH53_1606	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Universal stress protein B.	0.757
CH53_1321	yciC	CH53_1321	CH53_3890	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.746
CH53_1321	yciU	CH53_1321	CH53_3880	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein; Belongs to the UPF0263 family.	0.682
CH53_1321	ydgH	CH53_1321	CH53_4027	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Protein ydgH.	0.549
CH53_1321	ydgH_1	CH53_1321	CH53_1305	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Hypothetical protein.	0.531
CH53_1321	yecM	CH53_1321	CH53_3789	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Protein yecM.	0.768
CH53_1321	yhhK	CH53_1321	CH53_2032	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	Acetyltransferase domain protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.	0.604
CH53_1321	yjdC	CH53_1321	CH53_1380	Hypothetical protein; Opacity-associated A N-terminal motif family protein.	HTH-type transcriptional regulator yjdC.	0.500

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