STRINGSTRING
CH53_1321 CH53_1321 uspB uspB CH53_2858 CH53_2858 CH53_3150 CH53_3150 yecM yecM yciU yciU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CH53_1321Hypothetical protein; Opacity-associated A N-terminal motif family protein. (260 aa)
uspBUniversal stress protein B. (111 aa)
CH53_2858Hypothetical protein. (192 aa)
CH53_3150cyd_oper_ybgE: cyd operon protein YbgE. (97 aa)
yecMProtein yecM. (186 aa)
yciUHypothetical protein; Belongs to the UPF0263 family. (107 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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