STRINGSTRING
CH53_1334 CH53_1334 CH53_143 CH53_143 tsgA tsgA yiaH yiaH pspG pspG sgrR_2 sgrR_2 mdoC mdoC yhjH_2 yhjH_2 yobD yobD CH53_653 CH53_653 ywaD ywaD ampE ampE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CH53_1334Hypothetical protein. (66 aa)
CH53_143Fructosamine kinase family protein. (297 aa)
tsgAMajor Facilitator Superfamily protein. (394 aa)
yiaHInner membrane protein YiaH; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units. (330 aa)
pspGphageshock_pspG: phage shock protein G. (72 aa)
sgrR_2Bacterial extracellular solute-binding s, 5 Middle family protein. (567 aa)
mdoCAcyltransferase family protein; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane. (387 aa)
yhjH_2EAL domain protein. (230 aa)
yobDHypothetical protein. (153 aa)
CH53_653PRD domain protein. (427 aa)
ywaDPeptidase M20/M25/M40 family protein. (351 aa)
ampEProtein AmpE. (284 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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