Your Input: | |
| | arcA_1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein. (238 aa) |
| | yfiN | GGDEF: diguanylate cyclase domain protein. (432 aa) |
| | hmsT_1 | GGDEF: diguanylate cyclase domain protein. (360 aa) |
| | limB | Oxido_grp_1: luciferase oxidoreductase, group 1 family protein. (340 aa) |
| | basR_1 | Hypothetical protein; Transcriptional regulatory, C terminal family protein. (220 aa) |
| | basS | HAMP domain protein. (360 aa) |
| | ycgG_2 | EAL domain protein. (509 aa) |
| | trg_2 | Hypothetical protein. (551 aa) |
| | epaO | spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family. (318 aa) |
| | CH53_1416 | hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family. (207 aa) |
| | rcsC_1 | HAMP domain protein. (940 aa) |
| | nreC | Bacterial regulatory s, luxR family protein. (210 aa) |
| | envZ_1 | HAMP domain protein. (450 aa) |
| | ompR | Transcriptional regulatory protein ompR. (239 aa) |
| | yhjH_1 | EAL domain protein. (263 aa) |
| | yhjK | GGDEF: diguanylate cyclase domain protein. (667 aa) |
| | uhpC_2 | 2A0104: phosphoglycerate transporter family protein. (443 aa) |
| | nreB_2 | Histidine kinase family protein. (510 aa) |
| | uhpA | Transcriptional regulatory protein uhpA. (196 aa) |
| | cheM | Methyl-accepting chemotaxis (MCP) signaling domain protein. (653 aa) |
| | tar_1 | Methyl-accepting chemotaxis (MCP) signaling domain protein. (634 aa) |
| | ssuE | NADPH-dependent FMN reductase family protein. (190 aa) |
| | fixL | His Kinase A domain protein. (449 aa) |
| | fixJ_1 | Bacterial regulatory s, luxR family protein. (205 aa) |
| | CH53_1745 | Hypothetical protein. (164 aa) |
| | ntrC | Nitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa) |
| | glnL | Nitrogen regulation protein NR. (349 aa) |
| | zraR_3 | AAA domain family protein. (752 aa) |
| | echA8 | enoyl-CoA hydratase/isomerase family protein. (288 aa) |
| | gmr_3 | GGDEF: diguanylate cyclase domain protein. (664 aa) |
| | cpxA | Sensor protein CpxA. (458 aa) |
| | cpxR | Transcriptional regulatory protein CpxR. (232 aa) |
| | cpxP | Periplasmic protein CpxP. (165 aa) |
| | csrD | RNase E specificity factor CsrD. (639 aa) |
| | rpoN | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (477 aa) |
| | arcB | Sensory box protein. (778 aa) |
| | trg_3 | Hypothetical protein. (526 aa) |
| | flhA_2 | FHIPEP family protein. (564 aa) |
| | motB_2 | ompA family protein. (241 aa) |
| | gmr_2 | GGDEF: diguanylate cyclase domain protein. (855 aa) |
| | pleD_2 | GGDEF: diguanylate cyclase domain protein. (350 aa) |
| | gmr_4 | GGDEF: diguanylate cyclase domain protein. (625 aa) |
| | evgA | Positive transcription regulator evgA. (204 aa) |
| | evgS | Sensor protein evgS. (1204 aa) |
| | ycgG_1 | EAL domain protein. (533 aa) |
| | ygfY | Flavinator of succinate dehydrogenase family protein. (88 aa) |
| | CH53_2629 | Hypothetical protein. (142 aa) |
| | blrA | Response regulator. (231 aa) |
| | creC | HAMP domain protein. (475 aa) |
| | creD | Inner membrane CreD family protein. (468 aa) |
| | ydaM_1 | Putative diguanylate cyclase YdaM. (414 aa) |
| | cheD_2 | Hypothetical protein. (557 aa) |
| | glnD | protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism. (892 aa) |
| | cutF | nlpE N-terminal domain protein. (233 aa) |
| | phoB | phoB: phosphate regulon transcriptional regulatory protein PhoB. (229 aa) |
| | phoR | phoR_proteo: phosphate regulon sensor kinase PhoR. (438 aa) |
| | glnK | Nitrogen regulatory protein P-II 2; Belongs to the P(II) protein family. (112 aa) |
| | amt | Amt: ammonium transporter family protein. (429 aa) |
| | cheD2 | Methyl-accepting chemotaxis (MCP) signaling domain protein. (595 aa) |
| | adrA_3 | Putative diguanylate cyclase AdrA. (366 aa) |
| | tar_2 | Hypothetical protein. (553 aa) |
| | bvgS_2 | His Kinase A domain protein. (1064 aa) |
| | bvgA_2 | Bacterial regulatory s, luxR family protein. (202 aa) |
| | hyfR_1 | AAA domain family protein. (719 aa) |
| | ybjJ_3 | Major Facilitator Superfamily protein. (384 aa) |
| | rcsD | Hpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (897 aa) |
| | rcsB | rcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (217 aa) |
| | rcsC_3 | rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa) |
| | cheV | Response regulator. (325 aa) |
| | bvgS_1 | Hpt domain protein. (1288 aa) |
| | bvgA | Virulence factors putative positive transcription regulator BvgA. (210 aa) |
| | uhpC_1 | Major Facilitator Superfamily protein. (441 aa) |
| | nreB_1 | Histidine kinase family protein. (525 aa) |
| | uhpA_1 | Bacterial regulatory s, luxR family protein. (209 aa) |
| | zraR | Transcriptional regulatory protein zraR. (449 aa) |
| | zraS | His Kinase A domain protein. (479 aa) |
| | trg_1 | Hypothetical protein. (579 aa) |
| | motA | motA1: flagellar motor stator protein MotA. (295 aa) |
| | motB | Motility protein B. (397 aa) |
| | cheA | Chemotaxis protein CheA. (688 aa) |
| | cheW | cheW-like domain protein. (165 aa) |
| | cheD_1 | Hypothetical protein. (557 aa) |
| | tap | Methyl-accepting chemotaxis protein IV. (545 aa) |
| | cheR | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (287 aa) |
| | cheB | cheB methylesterase family protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa) |
| | cheY | Chemotaxis protein CheY. (129 aa) |
| | cheZ | Protein phosphatase CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (214 aa) |
| | flhB | Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (382 aa) |
| | flhA | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (692 aa) |
| | flgN | flgN family protein. (146 aa) |
| | flgM | flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM. (99 aa) |
| | flgA | Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family. (226 aa) |
| | flgB | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. (137 aa) |
| | flgC | flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. (134 aa) |
| | flgD | Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein. (230 aa) |
| | flgE | flgEFG_subfam: flagellar hook-basal body family protein. (428 aa) |
| | flgF | Flagellar basal-body rod protein flgF. (251 aa) |
| | flgG | flgG_G_neg: flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family. (260 aa) |
| | flgH | Flagellar L-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (219 aa) |
| | flgI | Flagellar P-ring family protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. (373 aa) |
| | flgJ | flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ. (313 aa) |
| | flgK | flgK_ends: flagellar hook-associated protein FlgK. (555 aa) |
| | flgL | flagell_flgL: flagellar hook-associated protein 3. (326 aa) |
| | fliR | Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. (260 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (279 aa) |
| | fliO | fliO_TIGR: flagellar biosynthetic protein FliO. (124 aa) |
| | fliN | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. (138 aa) |
| | fliM | Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (334 aa) |
| | fliL | Flagellar basal body-associated FliL family protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (156 aa) |
| | fliK | Flagellar hook-length control FliK family protein. (452 aa) |
| | fliJ | Flagellar export protein FliJ; Flagellar protein that affects chemotactic events. Belongs to the FliJ family. (148 aa) |
| | fliI | fliI_clade1: flagellar protein export ATPase FliI. (454 aa) |
| | fliH | Flagellar assembly FliH family protein. (242 aa) |
| | fliG | Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. (330 aa) |
| | fliF | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. (572 aa) |
| | fliE | fliE: flagellar hook-basal body complex protein FliE. (103 aa) |
| | fliT | Flagellar protein FliT; Dual-function protein that regulates the transcription of class 2 flagellar operons and that also acts as an export chaperone for the filament-capping protein FliD. As a transcriptional regulator, acts as an anti-FlhDC factor; it directly binds FlhC, thus inhibiting the binding of the FlhC/FlhD complex to class 2 promoters, resulting in decreased expression of class 2 flagellar operons. As a chaperone, effects FliD transition to the membrane by preventing its premature polymerization, and by directing it to the export apparatus. (120 aa) |
| | fliS | fliS: flagellar protein FliS. (132 aa) |
| | fliD | Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (468 aa) |
| | fliC | Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (497 aa) |
| | fliA | RNA polymerase sigma factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (240 aa) |
| | fliZ | fliZ: flagellar regulatory protein FliZ. (169 aa) |
| | adrA_1 | GGDEF: diguanylate cyclase domain protein. (328 aa) |
| | tap_1 | Methyl-accepting chemotaxis (MCP) signaling domain protein. (523 aa) |
| | uvrY | Response regulator. (218 aa) |
| | narP | Bacterial regulatory s, luxR family protein. (216 aa) |
| | narX | Nitrate/nitrite sensor protein narX. (593 aa) |
| | dosC | GGDEF: diguanylate cyclase domain protein. (372 aa) |
| | dosP | GGDEF: diguanylate cyclase domain protein. (865 aa) |
| | rssA | Patatin-like phospholipase family protein. (299 aa) |
| | hnr | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (338 aa) |
| | cdgR | EAL domain protein. (233 aa) |
| | CH53_3973 | Bacterial regulatory s, luxR family protein. (238 aa) |
| | CH53_4029 | Hypothetical protein. (138 aa) |
| | rstA | Response regulator. (242 aa) |
| | rstB | HAMP domain protein. (434 aa) |
| | ypwA | Carboxypeptidase Taq (M32) metallopeptidase family protein; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. (493 aa) |
| | asr | Hypothetical protein. (93 aa) |
| | tyrR | Transcriptional regulatory protein tyrR. (525 aa) |
| | pspF | phageshock_pspF: psp operon transcriptional activator. (341 aa) |
| | pleD_1 | GGDEF: diguanylate cyclase domain protein. (335 aa) |
| | cph2_1 | GGDEF: diguanylate cyclase domain protein. (569 aa) |
| | CH53_4305 | EAL domain protein. (519 aa) |
| | adrA_2 | GGDEF: diguanylate cyclase domain protein. (693 aa) |
| | cph2_2 | GGDEF: diguanylate cyclase domain protein. (467 aa) |
| | aer | Sensory box protein. (519 aa) |
| | phoP | Transcriptional regulatory protein phoP. (223 aa) |
| | phoQ | Virulence sensor histidine kinase phoQ. (468 aa) |
| | cpxA_1 | HAMP domain protein. (455 aa) |
| | ompR_1 | Response regulator. (227 aa) |
| | narL | Bacterial regulatory s, luxR family protein. (209 aa) |
| | glnB | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa) |
| | qseF | AAA domain family protein. (445 aa) |
| | qseG | yfhG lipofamily protein. (394 aa) |
| | glrK | HAMP domain protein. (478 aa) |
| | hmsT_2 | GGDEF: diguanylate cyclase domain protein. (319 aa) |
| | barA_2 | Sensory box protein. (1521 aa) |
| | barA_1 | HAMP domain protein. (920 aa) |
| | yjcC | EAL domain protein. (512 aa) |
