STRINGSTRING
kinE kinE CH53_2175 CH53_2175 arcB arcB CH53_2281 CH53_2281 ompR_3 ompR_3 envZ_2 envZ_2 trg_3 trg_3 cadC_2 cadC_2 CH53_2456 CH53_2456 CH53_2470 CH53_2470 gmr_4 gmr_4 evgA evgA evgS evgS blrA blrA creC creC cheD_2 cheD_2 rcsF rcsF ttrS ttrS phoB phoB phoR phoR fixJ_2 fixJ_2 cheD2 cheD2 tar_2 tar_2 kdpE kdpE kdpD kdpD bvgS_2 bvgS_2 bvgA_2 bvgA_2 CH53_3255 CH53_3255 hyfR_1 hyfR_1 rcsD rcsD rcsB rcsB rcsC_3 rcsC_3 cheV cheV CH53_3418 CH53_3418 bvgS_1 bvgS_1 bvgA bvgA nreB_1 nreB_1 uhpA_1 uhpA_1 dpiA dpiA yehU yehU ompR ompR envZ_1 envZ_1 nreC nreC rcsC_1 rcsC_1 trg_2 trg_2 basS basS basR_1 basR_1 basR_2 basR_2 baeS_2 baeS_2 yfiN yfiN arcA_1 arcA_1 dpiB dpiB zraR zraR zraS zraS CH53_3485 CH53_3485 trg_1 trg_1 cheA cheA cheW cheW cheD_1 cheD_1 tap tap cheB cheB cheY cheY adrA_1 adrA_1 tap_1 tap_1 uvrY uvrY narP narP dcuR dcuR dcuS dcuS narX narX dosC dosC CH53_99 CH53_99 rcsB_3 rcsB_3 barA_1 barA_1 CH53_90 CH53_90 CH53_88 CH53_88 lytT lytT yfiH_1 yfiH_1 barA_2 barA_2 hmsT_2 hmsT_2 glrK glrK qseF qseF baeR baeR baeS_1 baeS_1 narL narL ompR_1 ompR_1 cpxA_1 cpxA_1 ypdB ypdB ypdA ypdA phoQ phoQ phoP phoP aer aer yfiH_2 yfiH_2 rstB rstB rstA rstA hyfR_2 hyfR_2 hnr hnr yhjK yhjK nreB_2 nreB_2 uhpA uhpA cheM cheM tar_1 tar_1 fixL fixL fixJ_1 fixJ_1 ntrC ntrC glnL glnL zraR_3 zraR_3 cpxA cpxA cpxR cpxR zraR_2 zraR_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kinESensory box protein. (593 aa)
CH53_2175phoPQ-activated pathogenicity-related family protein. (511 aa)
arcBSensory box protein. (778 aa)
CH53_2281PGAP1-like family protein. (560 aa)
ompR_3Response regulator. (235 aa)
envZ_2HAMP domain protein. (456 aa)
trg_3Hypothetical protein. (526 aa)
cadC_2Hypothetical protein; Transcriptional regulatory, C terminal family protein. (290 aa)
CH53_2456Hypothetical protein; Transcriptional regulatory, C terminal family protein. (290 aa)
CH53_2470Hypothetical protein; Transcriptional regulatory, C terminal family protein. (151 aa)
gmr_4GGDEF: diguanylate cyclase domain protein. (625 aa)
evgAPositive transcription regulator evgA. (204 aa)
evgSSensor protein evgS. (1204 aa)
blrAResponse regulator. (231 aa)
creCHAMP domain protein. (475 aa)
cheD_2Hypothetical protein. (557 aa)
rcsFPutative protein rcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. (135 aa)
ttrSHis Kinase A domain protein. (586 aa)
phoBphoB: phosphate regulon transcriptional regulatory protein PhoB. (229 aa)
phoRphoR_proteo: phosphate regulon sensor kinase PhoR. (438 aa)
fixJ_2Bacterial regulatory s, luxR family protein. (194 aa)
cheD2Methyl-accepting chemotaxis (MCP) signaling domain protein. (595 aa)
tar_2Hypothetical protein. (553 aa)
kdpEKDP operon transcriptional regulatory protein kdpE. (229 aa)
kdpDUniversal stress family protein. (904 aa)
bvgS_2His Kinase A domain protein. (1064 aa)
bvgA_2Bacterial regulatory s, luxR family protein. (202 aa)
CH53_3255Hypothetical protein. (179 aa)
hyfR_1AAA domain family protein. (719 aa)
rcsDHpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (897 aa)
rcsBrcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (217 aa)
rcsC_3rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa)
cheVResponse regulator. (325 aa)
CH53_3418PGAP1-like family protein. (545 aa)
bvgS_1Hpt domain protein. (1288 aa)
bvgAVirulence factors putative positive transcription regulator BvgA. (210 aa)
nreB_1Histidine kinase family protein. (525 aa)
uhpA_1Bacterial regulatory s, luxR family protein. (209 aa)
dpiATranscriptional regulatory protein DpiA. (228 aa)
yehUHistidine kinase family protein. (565 aa)
ompRTranscriptional regulatory protein ompR. (239 aa)
envZ_1HAMP domain protein. (450 aa)
nreCBacterial regulatory s, luxR family protein. (210 aa)
rcsC_1HAMP domain protein. (940 aa)
trg_2Hypothetical protein. (551 aa)
basSHAMP domain protein. (360 aa)
basR_1Hypothetical protein; Transcriptional regulatory, C terminal family protein. (220 aa)
basR_2Hypothetical protein; Transcriptional regulatory, C terminal family protein. (224 aa)
baeS_2HAMP domain protein. (469 aa)
yfiNGGDEF: diguanylate cyclase domain protein. (432 aa)
arcA_1Hypothetical protein; Transcriptional regulatory, C terminal family protein. (238 aa)
dpiBSensor histidine kinase DpiB. (528 aa)
zraRTranscriptional regulatory protein zraR. (449 aa)
zraSHis Kinase A domain protein. (479 aa)
CH53_3485FRG domain protein. (466 aa)
trg_1Hypothetical protein. (579 aa)
cheAChemotaxis protein CheA. (688 aa)
cheWcheW-like domain protein. (165 aa)
cheD_1Hypothetical protein. (557 aa)
tapMethyl-accepting chemotaxis protein IV. (545 aa)
cheBcheB methylesterase family protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
cheYChemotaxis protein CheY. (129 aa)
adrA_1GGDEF: diguanylate cyclase domain protein. (328 aa)
tap_1Methyl-accepting chemotaxis (MCP) signaling domain protein. (523 aa)
uvrYResponse regulator. (218 aa)
narPBacterial regulatory s, luxR family protein. (216 aa)
dcuRTranscriptional regulatory protein dcuR. (239 aa)
dcuSPAS fold family protein. (543 aa)
narXNitrate/nitrite sensor protein narX. (593 aa)
dosCGGDEF: diguanylate cyclase domain protein. (372 aa)
CH53_99Hypothetical protein; Transcriptional regulatory, C terminal family protein. (144 aa)
rcsB_3Bacterial regulatory s, luxR family protein. (197 aa)
barA_1HAMP domain protein. (920 aa)
CH53_90Hypothetical protein; Transcriptional regulatory, C terminal family protein. (151 aa)
CH53_88Hypothetical protein; Transcriptional regulatory, C terminal family protein. (247 aa)
lytTResponse regulator. (238 aa)
yfiH_1Multi-copper polyphenol oxidoreductase laccase family protein; Belongs to the multicopper oxidase YfiH/RL5 family. (244 aa)
barA_2Sensory box protein. (1521 aa)
hmsT_2GGDEF: diguanylate cyclase domain protein. (319 aa)
glrKHAMP domain protein. (478 aa)
qseFAAA domain family protein. (445 aa)
baeRResponse regulator. (239 aa)
baeS_1HAMP domain protein. (458 aa)
narLBacterial regulatory s, luxR family protein. (209 aa)
ompR_1Response regulator. (227 aa)
cpxA_1HAMP domain protein. (455 aa)
ypdBResponse regulator. (246 aa)
ypdA5TMR of 5TMR-LYT family protein. (566 aa)
phoQVirulence sensor histidine kinase phoQ. (468 aa)
phoPTranscriptional regulatory protein phoP. (223 aa)
aerSensory box protein. (519 aa)
yfiH_2Multi-copper polyphenol oxidoreductase laccase family protein; Belongs to the multicopper oxidase YfiH/RL5 family. (239 aa)
rstBHAMP domain protein. (434 aa)
rstAResponse regulator. (242 aa)
hyfR_2AAA domain family protein. (513 aa)
hnrResponse regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (338 aa)
yhjKGGDEF: diguanylate cyclase domain protein. (667 aa)
nreB_2Histidine kinase family protein. (510 aa)
uhpATranscriptional regulatory protein uhpA. (196 aa)
cheMMethyl-accepting chemotaxis (MCP) signaling domain protein. (653 aa)
tar_1Methyl-accepting chemotaxis (MCP) signaling domain protein. (634 aa)
fixLHis Kinase A domain protein. (449 aa)
fixJ_1Bacterial regulatory s, luxR family protein. (205 aa)
ntrCNitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa)
glnLNitrogen regulation protein NR. (349 aa)
zraR_3AAA domain family protein. (752 aa)
cpxASensor protein CpxA. (458 aa)
cpxRTranscriptional regulatory protein CpxR. (232 aa)
zraR_2Bacterial regulatory, Fis family protein. (469 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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