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cyoC cyoC dmsC1 dmsC1 yodB_1 yodB_1 dmsC2 dmsC2 yceJ yceJ nuoD nuoD nuoE nuoE nuoG nuoG appC appC nuoK nuoK nuoL nuoL nuoM nuoM nuoN nuoN hyfB hyfB hyfC hyfC hyfD hyfD hyfE hyfE hyfF hyfF hyfG hyfG dld dld ybgT ybgT cydA cydA nqrE nqrE nqrB nqrB yodB_2 yodB_2 hybC hybC hybA hybA fdoI fdoI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cyoCcyoC: cytochrome o ubiquinol oxidase, subunit III. (204 aa)
dmsC1DMSO reductase anchor subunit family protein. (286 aa)
yodB_1Hypothetical protein. (174 aa)
dmsC2DMSO reductase anchor subunit family protein. (258 aa)
yceJProkaryotic cytochrome b561 family protein. (184 aa)
nuoDNADH dehydrogenase (quinone), D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. (598 aa)
nuoENADH-quinone oxidoreductase subunit E. (187 aa)
nuoGNADH dehydrogenase (quinone), G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (914 aa)
appCBacterial Cytochrome Ubiquinol Oxidase family protein. (476 aa)
nuoKNADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (100 aa)
nuoLNDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L family protein. (614 aa)
nuoMNADH-quinone oxidoreductase subunit M. (507 aa)
nuoNProton-translocating NADH-quinone oxidoreductase, chain N family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (485 aa)
hyfBHydrogenase-4 component B. (674 aa)
hyfCHydrogenase-4 component C. (307 aa)
hyfDNADH-Ubiquinone/plastoquinone (complex I), various chains family protein. (483 aa)
hyfEHydrogenase-4 component E. (221 aa)
hyfFNADH-Ubiquinone/plastoquinone (complex I), various chains family protein. (543 aa)
hyfGNickel-dependent hydrogenase family protein. (606 aa)
dldFAD binding domain protein; Catalyzes the oxidation of D-lactate to pyruvate. Belongs to the quinone-dependent D-lactate dehydrogenase family. (570 aa)
ybgTcyd_oper_ybgT: cyd operon protein YbgT. (45 aa)
cydACytochrome d ubiquinol oxidase subunit 1. (522 aa)
nqrEUbiquinone oxidoreductase, Na(+)-translocating, E subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (198 aa)
nqrBUbiquinone oxidoreductase, Na(+)-translocating, B subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (413 aa)
yodB_2Hypothetical protein. (177 aa)
hybCHydrogenase-2 large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (564 aa)
hybA4Fe-4S dicluster domain protein. (342 aa)
fdoIformate-DH-gamm: formate dehydrogenase, gamma subunit. (216 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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