STRINGSTRING
phoP phoP basR_1 basR_1 basR_2 basR_2 arcA_1 arcA_1 nreC nreC ompR ompR uhpA uhpA rcsC_1 rcsC_1 fixJ_1 fixJ_1 ntrC ntrC cpxR cpxR zraR_2 zraR_2 arcB arcB ompR_3 ompR_3 evgA evgA evgS evgS blrA blrA phoB phoB fixJ_2 fixJ_2 kdpE kdpE bvgS_2 bvgS_2 bvgA_2 bvgA_2 rcsB rcsB rcsC_3 rcsC_3 cheV cheV bvgS_1 bvgS_1 bvgA bvgA uhpA_1 uhpA_1 dpiA dpiA zraR zraR cheB cheB cheY cheY uvrY uvrY narP narP dcuR dcuR hnr hnr rstA rstA ypdB ypdB ompR_1 ompR_1 narL narL baeR baeR qseF qseF hmsT_2 hmsT_2 barA_2 barA_2 lytT lytT cheY_2 cheY_2 barA_1 barA_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
phoPTranscriptional regulatory protein phoP. (223 aa)
basR_1Hypothetical protein; Transcriptional regulatory, C terminal family protein. (220 aa)
basR_2Hypothetical protein; Transcriptional regulatory, C terminal family protein. (224 aa)
arcA_1Hypothetical protein; Transcriptional regulatory, C terminal family protein. (238 aa)
nreCBacterial regulatory s, luxR family protein. (210 aa)
ompRTranscriptional regulatory protein ompR. (239 aa)
uhpATranscriptional regulatory protein uhpA. (196 aa)
rcsC_1HAMP domain protein. (940 aa)
fixJ_1Bacterial regulatory s, luxR family protein. (205 aa)
ntrCNitrogen regulation protein NR; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (470 aa)
cpxRTranscriptional regulatory protein CpxR. (232 aa)
zraR_2Bacterial regulatory, Fis family protein. (469 aa)
arcBSensory box protein. (778 aa)
ompR_3Response regulator. (235 aa)
evgAPositive transcription regulator evgA. (204 aa)
evgSSensor protein evgS. (1204 aa)
blrAResponse regulator. (231 aa)
phoBphoB: phosphate regulon transcriptional regulatory protein PhoB. (229 aa)
fixJ_2Bacterial regulatory s, luxR family protein. (194 aa)
kdpEKDP operon transcriptional regulatory protein kdpE. (229 aa)
bvgS_2His Kinase A domain protein. (1064 aa)
bvgA_2Bacterial regulatory s, luxR family protein. (202 aa)
rcsBrcsB protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (217 aa)
rcsC_3rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa)
cheVResponse regulator. (325 aa)
bvgS_1Hpt domain protein. (1288 aa)
bvgAVirulence factors putative positive transcription regulator BvgA. (210 aa)
uhpA_1Bacterial regulatory s, luxR family protein. (209 aa)
dpiATranscriptional regulatory protein DpiA. (228 aa)
zraRTranscriptional regulatory protein zraR. (449 aa)
cheBcheB methylesterase family protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
cheYChemotaxis protein CheY. (129 aa)
uvrYResponse regulator. (218 aa)
narPBacterial regulatory s, luxR family protein. (216 aa)
dcuRTranscriptional regulatory protein dcuR. (239 aa)
hnrResponse regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (338 aa)
rstAResponse regulator. (242 aa)
ypdBResponse regulator. (246 aa)
ompR_1Response regulator. (227 aa)
narLBacterial regulatory s, luxR family protein. (209 aa)
baeRResponse regulator. (239 aa)
qseFAAA domain family protein. (445 aa)
hmsT_2GGDEF: diguanylate cyclase domain protein. (319 aa)
barA_2Sensory box protein. (1521 aa)
lytTResponse regulator. (238 aa)
cheY_2Stage II sporulation E family protein. (428 aa)
barA_1HAMP domain protein. (920 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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