STRINGSTRING
ttrS ttrS gyrB gyrB fixL fixL glnL glnL cpxA cpxA kinE kinE arcB arcB parE parE envZ_2 envZ_2 evgS evgS phoR phoR creC creC nreB_2 nreB_2 kdpD kdpD htpG htpG barA_1 barA_1 CH53_81 CH53_81 barA_2 barA_2 glrK glrK baeS_1 baeS_1 cpxA_1 cpxA_1 ypdA ypdA phoQ phoQ rstB rstB narX narX dcuS dcuS cheA cheA zraS zraS dpiB dpiB nreB_1 nreB_1 bvgS_1 bvgS_1 rcsC_3 rcsC_3 rcsD rcsD bvgS_2 bvgS_2 baeS_2 baeS_2 basS basS rcsC_1 rcsC_1 envZ_1 envZ_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ttrSHis Kinase A domain protein. (586 aa)
gyrBDNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (804 aa)
fixLHis Kinase A domain protein. (449 aa)
glnLNitrogen regulation protein NR. (349 aa)
cpxASensor protein CpxA. (458 aa)
kinESensory box protein. (593 aa)
arcBSensory box protein. (778 aa)
parEDNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (631 aa)
envZ_2HAMP domain protein. (456 aa)
evgSSensor protein evgS. (1204 aa)
phoRphoR_proteo: phosphate regulon sensor kinase PhoR. (438 aa)
creCHAMP domain protein. (475 aa)
nreB_2Histidine kinase family protein. (510 aa)
kdpDUniversal stress family protein. (904 aa)
htpGHsp90 family protein; Molecular chaperone. Has ATPase activity. (622 aa)
barA_1HAMP domain protein. (920 aa)
CH53_81Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein. (143 aa)
barA_2Sensory box protein. (1521 aa)
glrKHAMP domain protein. (478 aa)
baeS_1HAMP domain protein. (458 aa)
cpxA_1HAMP domain protein. (455 aa)
ypdA5TMR of 5TMR-LYT family protein. (566 aa)
phoQVirulence sensor histidine kinase phoQ. (468 aa)
rstBHAMP domain protein. (434 aa)
narXNitrate/nitrite sensor protein narX. (593 aa)
dcuSPAS fold family protein. (543 aa)
cheAChemotaxis protein CheA. (688 aa)
zraSHis Kinase A domain protein. (479 aa)
dpiBSensor histidine kinase DpiB. (528 aa)
nreB_1Histidine kinase family protein. (525 aa)
bvgS_1Hpt domain protein. (1288 aa)
rcsC_3rcsC Alpha-Beta-Loop family protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (932 aa)
rcsDHpt domain protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB. (897 aa)
bvgS_2His Kinase A domain protein. (1064 aa)
baeS_2HAMP domain protein. (469 aa)
basSHAMP domain protein. (360 aa)
rcsC_1HAMP domain protein. (940 aa)
envZ_1HAMP domain protein. (450 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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