STRINGSTRING
gmr_4 gmr_4 pleD_1 pleD_1 dosP dosP cph2_1 cph2_1 cph2_2 cph2_2 aer aer barA_2 barA_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gmr_4GGDEF: diguanylate cyclase domain protein. (625 aa)
pleD_1GGDEF: diguanylate cyclase domain protein. (335 aa)
dosPGGDEF: diguanylate cyclase domain protein. (865 aa)
cph2_1GGDEF: diguanylate cyclase domain protein. (569 aa)
cph2_2GGDEF: diguanylate cyclase domain protein. (467 aa)
aerSensory box protein. (519 aa)
barA_2Sensory box protein. (1521 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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