STRINGSTRING
fepG fepG arcA_1 arcA_1 speF speF potE potE ispB ispB ccdB ccdB CH53_1919 CH53_1919 CH53_1920 CH53_1920 livF livF exbB exbB kbaZ kbaZ fes fes hypF hypF thiM thiM proP proP agaS agaS kbaY kbaY pucG pucG lnt lnt glnQ_2 glnQ_2 gmd gmd galU galU galU-2 galU-2 motB motB mdoH mdoH prfA prfA mdoG mdoG mdoC mdoC mdeA mdeA dsbE dsbE ccmE ccmE fabF_3 fabF_3 dmsA dmsA fmdA fmdA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fepGfecCD transport family protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (347 aa)
arcA_1Hypothetical protein; Transcriptional regulatory, C terminal family protein. (238 aa)
speFBeta-eliminating lyase family protein. (720 aa)
potEPutrescine-ornithine antiporter; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family. (438 aa)
ispBOctaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (323 aa)
ccdBccdB. (102 aa)
CH53_1919Heme-binding A family protein. (227 aa)
CH53_1920Heme-binding A family protein. (216 aa)
livFHigh-affinity branched-chain amino acid transport ATP-binding protein LivF; Belongs to the ABC transporter superfamily. (233 aa)
exbBexbB: tonB-system energizer ExbB. (336 aa)
kbaZagaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. (430 aa)
fesHypothetical protein. (431 aa)
hypFCarbamoyltransferase HypF; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. (761 aa)
thiMHydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. (271 aa)
proPProline/betaine transporter. (500 aa)
agaSPutative tagatose-6-phosphate ketose/aldose isomerase. (384 aa)
kbaYTag_bisphos_ald: class II aldolase, tagatose bisphosphate family. (292 aa)
pucGPutative ureidoglycine-glyoxylate aminotransferase. (427 aa)
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (515 aa)
glnQ_2ABC transporter family protein. (240 aa)
gmdGmd: GDP-mannose 4,6-dehydratase. (345 aa)
galUgalU: UTP--glucose-1-phosphate uridylyltransferase. (296 aa)
galU-2galU: UTP--glucose-1-phosphate uridylyltransferase. (297 aa)
motBMotility protein B. (397 aa)
mdoHGlycosyl transferase 21 family protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (860 aa)
prfAPeptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (360 aa)
mdoGPeriplasmic glucan biosynthesis, MdoG family protein; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (517 aa)
mdoCAcyltransferase family protein; Necessary for the succinyl substitution of periplasmic glucans. Could catalyze the transfer of succinyl residues from the cytoplasmic side of the membrane to the nascent glucan backbones on the periplasmic side of the membrane. (387 aa)
mdeAOAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein. (425 aa)
dsbEThiol:disulfide interchange protein DsbE. (188 aa)
ccmECytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (164 aa)
fabF_3Thiolase, N-terminal domain protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (415 aa)
dmsAAnaerobic dimethyl sulfoxide reductase chain A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (814 aa)
fmdAacetamidase/Formamidase family protein. (328 aa)
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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