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| | truB | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (237 aa) |
| | rngA | Ribonuclease G is involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure; Contains a S1 motif domain; Belongs to the RNase E/G family, RNase G subfamily; Localized in the cytoplasm; High confidence in function and specificity. (515 aa) |
| | glyQS | Glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (516 aa) |
| | ileS | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1132 aa) |
| | pheS | PheS encodes the alpha subunit of Phenylalanyl-tRNA synthetase. the Phenylalanyl-tRNA synthetase is an alpha2/beta2 tetramer that catalyzes the attachment of phenylalanine to its cognate transfer RNA molecule in a highly specific two-step reaction; Binds 2 magnesium ions per tetramer; Belongs to class II aminoacyl-tRNA synthetases; Localized in the cytoplasm; High confidence in function and specificity. (339 aa) |
| | rsmI | Methyltransferases; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (223 aa) |
| | rnhA | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (211 aa) |
| | rncA | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (245 aa) |
| | rbfA | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. (130 aa) |
| | dusB | tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (331 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (125 aa) |
| | vacB | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (731 aa) |
| | glnS | Glutaminyl-tRNA synthetase is a class Ic synthetase and catalyzes the attachment of glutamine to its cognate transfer RNA molecule. This monomeric enzyme has an architecture; High confidence in function and specificity. (560 aa) |
| | gltX | Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (502 aa) |
| | ybeY | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (139 aa) |
| | mnmG | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (622 aa) |
| | trpS | Tryptophanyl-tRNA synthetase catalyzes the attachment of tryptophan to its cognate transfer RNA molecule in a highly specific two-step reaction. TrpS forms a homodimer and adopts a characteristic Rossman fold; Belongs to the class I of the tryptophanyl-tRNA synthetase, subclass b; Localized in the cytoplasm; High confidence in function and specificity. (322 aa) |
| | CAZ95852.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (190 aa) |
| | CAZ95856.1 | Conserved hypothetical protein; Hypothetical sulfurtransferase that contains one rhodanese domain, Belongs to the UPF0176 family; localized in the cytoplasm. (343 aa) |
| | CAZ95935.1 | In metal-dependent phosphohydrolase, divalent cations are coordinated by conserved histidines and aspartates; Belongs to the HD superfamily; Localized in the cytoplasm; Family membership. (230 aa) |
| | CAZ95954.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Localized in the cytoplasm; Specifici [...] (184 aa) |
| | CAZ95978.1 | This conserved protein contains a N-terminal domain Localized in the cytoplasm; Family membership. (285 aa) |
| | tadA | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (149 aa) |
| | aspS | Aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (584 aa) |
| | CAZ96002.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Belongs to the sigma-70 factor family, ECF subfamily; Localized [...] (179 aa) |
| | CAZ94075.1 | Methyltransferases; Enzyme that uses S-AdoMet in the methylation of diverse substrates; Belongs to the UPF0011 family; Localized in the cytoplasm; Specificity unclear. (241 aa) |
| | metG | Methionyl-tRNA synthetase, class Ia; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (692 aa) |
| | ksgA | 16S rRNA adenine dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (287 aa) |
| | serS | Seryl-tRNA synthetase, class IIa; Seryl-tRNA synthetase is responsible for the attachment of serine to the 3' OH group of ribose of its cognate transfer RNA molecule (tRNA(Ser)) in a highly specific two-step reaction. It is a homodimer; Belongs to the class-IIa aminoacyl-tRNA synthetase family; Localized in the cytoplasm; High confidence in function and specificity. (423 aa) |
| | trmE | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. (465 aa) |
| | CAZ96331.1 | Adenine-specific DNA methyltransferase; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (242 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (176 aa) |
| | hisS | Histidyl-tRNA synthetase is responsible for the attachment of histidine to the 3' OH group of ribose of its cognate transfer RNA molecule (tRNA(His)) in a highly specific two-step reaction. It is a homodimer; Belongs to the class-IIa aminoacyl-tRNA synthetase family; Localized in the cytoplasm; High confidence in function and specificity. (458 aa) |
| | CAZ96449.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (178 aa) |
| | CAZ95051.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (192 aa) |
| | alaS | Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (871 aa) |
| | lysS | Lysyl-tRNA synthetase catalyzes the attachment of L-lysine to the tRNA(Lys) in a highly specific two-step reaction. LysS is an homodimer and binds 3 magnesium ions per subunit; Belongs to the class II of the aminoacyl-tRNA synthetases; Localized in the cytoplasm; High confidence in function and specificity. (562 aa) |
| | CAZ94995.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (189 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (201 aa) |
| | CAZ94980.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (179 aa) |
| | rsmB | Ribosomal RNA small subunit methyltransferase B; RsmB specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. It uses S-adenosyl-L-methionine as cofactor. Localized in the cytoplasm; High confidence in function and specificity; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (403 aa) |
| | CAZ94961.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (181 aa) |
| | CAZ94160.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (184 aa) |
| | dtd | D-Tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa) |
| | rlmN | Radical SAM family protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (346 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (659 aa) |
| | mraW | S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (299 aa) |
| | CAZ94152.1 | MiaB-like tRNA modifying protein; Contains a N-terminal UPF0004 domain of unknown function, a Radical SAM superfamily, MiaB family domain involved in 2-methylthioadenine formation and a C-terminal TRAM domain predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets; Binds 1 4Fe-4S cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine (SAM); Localized in the cytoplasm; Family membership. (452 aa) |
| | dusA | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (320 aa) |
| | yibK | tRNA/rRNA 2O-methyltransferase YibK; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. (149 aa) |
| | rpoD1 | RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (287 aa) |
| | pnpA | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (740 aa) |
| | CAZ94828.1 | tRNA/rRNA methyltransferase; Catalyzes the site-specific methylation of the 2' hydroxy group of the ribose in rRNA or tRNA, using the S-AdoMet; Contains a N-terminal RNA 2'-O ribose methyltransferase substrate binding domain and a C-terminal catalytic domain also involved in the dimer formation that adopts an alpha/beta knot fold; Belongs to the RNA methyltransferase TrmH family; Localized in the cytoplasm; Family membership. (240 aa) |
| | rsmG | Ribosomal RNA small subunit methyltransferase G; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. (211 aa) |
| | CAZ94776.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (184 aa) |
| | CAZ94773.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (188 aa) |
| | valS | Valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (876 aa) |
| | rluD | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (342 aa) |
| | nusG | Transcription antitermination protein; Participates in transcription elongation, termination and antitermination. (183 aa) |
| | rpoB | DNA-dependent RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1269 aa) |
| | rpoC | DNA-dependent RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1432 aa) |
| | rimO | MiaB-like tRNA modifying protein; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (433 aa) |
| | trmU | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (419 aa) |
| | CAZ94603.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (164 aa) |
| | CAZ94125.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released. They alter the specificity of promoter recognition. This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors. Localized in the cytoplasm; Family membership. (169 aa) |
| | CAZ94582.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (194 aa) |
| | rrnA | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (301 aa) |
| | miaE | tRNA-(ms[2]io[6]A)-hydroxylase; MiaE is involved in the production of the modified nucleoside 2-methylthio-cis-ribozeatin (MS[2]IO[6]A) found in some tRNAs. Catalyzes the oxygen-dependent transformation of MS[2]I[6]A into MS[2]IO[6]A. Localized in the cytoplasm; High confidence in function and specificity. (193 aa) |
| | CAZ94559.1 | Conserved hypothetical protein predicted as a methyltransferase; Localized in the cytoplasm. (184 aa) |
| | CAZ98902.1 | Conserved hypothetical protein. Localized in the cytoplasm. (110 aa) |
| | miaA | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (310 aa) |
| | pheT | Phenylalanyl-tRNA synthetase catalyzes the attachment of phenylalanyl to its cognate transfer RNA molecule in a highly specific two-step reaction. It is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class II aminoacyl-tRNA synthetases. PheT codes the beta subunit and folds as an anti-parallel beta-sheet flanked by alpha-helices. Phenylalanyl-tRNA synthetase binds 2 magnesium ions per tetramer. Localized in the cytoplasm; High confidence in function and specificity. (809 aa) |
| | truC | tRNA pseudouridine synthase C; Enzyme responsible for synthesis of pseudouridine from uracil at position 65 in transfert RNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Belongs to the pseudouridine synthase RluA family; localized in the cytoplasm; High confidence in function and specificity. (232 aa) |
| | CAZ98765.1 | Conserved hypothetical protein; Localized in the cytoplasm. (127 aa) |
| | CAZ98764.1 | Conserved hypothetical protein; Localized in the cytoplasm; Belongs to the methyltransferase superfamily. (218 aa) |
| | tilS | tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (435 aa) |
| | CAZ94533.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (200 aa) |
| | CAZ98728.1 | Conserved hypothetical protein; Localized in the cytoplasm. (287 aa) |
| | CAZ98727.1 | Protein containing a C-terminal Poxvirus D5 protein-like found at the C terminus of phage P4 alpha protein and related proteins. This domain could correspond the ori DNA recognition site; Localized in the cytoplasm; Family membership. (488 aa) |
| | CAZ98718.1 | Proteins in the PIN domain family are Localized in the cytoplasm; Function unclear. (190 aa) |
| | CAZ98665.1 | This protein belongs to the UPF0079 family. This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes. These proteins adopt a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ [...] (137 aa) |
| | CAZ98637.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (180 aa) |
| | CAZ98530.1 | Conserved hypothetical protein; Localized in the cytoplasm. (310 aa) |
| | trmH | tRNA guanosine-2'-O-methyltransferase; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (218 aa) |
| | rluE | Enzyme responsible for synthesis of pseudouridine from uracil-2457 in 23S ribosomal RNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Belongs to the pseudouridine synthase RsuA family; localized in the cytoplasm; High confidence in function and specificity. (197 aa) |
| | rpoD2 | RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (287 aa) |
| | truA2 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (265 aa) |
| | CAZ98259.1 | YrdC family protein; Conserved protein belonging to the YrdC family. The YrdC protein from E. coli forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands. YrdC was shown to binds double-stranded RNA. Its exact function is unclear. Localized in the cytoplasm; Function unclear; Belongs to the SUA5 family. (206 aa) |
| | CAZ98256.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (192 aa) |
| | CAZ98207.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (193 aa) |
| | CAZ98205.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (193 aa) |
| | CAZ98185.1 | Conserved hypothetical protein belonging to the DUF1508 family; Localized in the cytoplasm. (110 aa) |
| | CAZ98126.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (187 aa) |
| | CAZ98122.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (194 aa) |
| | fmt | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (315 aa) |
| | CAZ98086.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (174 aa) |
| | CAZ98070.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (187 aa) |
| | CAZ97988.1 | Conserved hypothetical protein; Localized in the cytoplasm. (256 aa) |
| | CAZ97962.1 | Conserved hypothetical membrane protein; Contains three transmembrane helices; Localized in the cytoplasmic membrane; Conserved hypothetical protein. (207 aa) |
| | guaD | Guanine deaminase catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia. Expressed only during limited or partially limited nitrogen conditions. Can be induced to high levels in the presence of purines or intermediates of the purine catabolic pathway. GuaD adopts an alpha/beta/alpha three- layered fold and forms a homodimer. The essential zinc ion is ligated by a water molecule together with conserved residues, one histidine and two cysteine. Belongs to the cytidine and deoxycytidylate deaminase family. Localized in the cytoplasm; High confidence in function a [...] (160 aa) |
| | camP | O-Sialoglycoprotein endopeptidase, family M22; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (345 aa) |
| | rsmE | m3U1498 16S rRNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (235 aa) |
| | CAZ97867.1 | Conserved hypothetical protein. Localized in the cytoplasm. (370 aa) |
| | CAZ94110.1 | Conserved hypothetical protein featuring a C-terminal helix-turn-helix DNA-binding motif. Localized in the cytoplasm; Conserved hypothetical protein. (202 aa) |
| | CAZ97816.1 | tRNA/rRNA methyltransferase; Catalyzes the site-specific methylation of the 2' hydroxy group of the ribose in rRNA or tRNA, using the S-AdoMet; Contains a N-terminal RNA 2'-O ribose methyltransferase substrate binding domain and a C-terminal catalytic domain also involved in the dimer formation that adopts an alpha/beta knot fold; Belongs to the RNA methyltransferase TrmH family; Localized in the cytoplasm; Family membership. (270 aa) |
| | rluC | Ribosomal large subunit pseudouridine synthase C; Enzyme responsible for synthesis of pseudouridine from uracil at positions 955, 2504 and 2580 in 23S ribosomal RNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Contains a N-terminal S4 RNA- binding domain that probably mediates binding to RNA; Belongs to the pseudouridine synthase RluA family; localized in the cytoplasm; High confidence in function and specificity. (270 aa) |
| | CAZ94432.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (192 aa) |
| | CAZ97666.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (189 aa) |
| | CAZ97462.1 | RNA pseudouridine synthase; Enzyme responsible for synthesis of pseudouridine from uracil in tRNA or rRNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Belongs to the pseudouridine synthase RluA family; localized in the cytoplasm; Specificity unclear. (222 aa) |
| | CAZ94404.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (218 aa) |
| | rlmH | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (157 aa) |
| | CAZ94388.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (184 aa) |
| | rny | Metal-dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (522 aa) |
| | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA; The RumA protein catalyzes the formation of 5-methyl-uridine at position 1939 (M-5-U1939) in 23S rRNA; Contains two structural domains: an N-terminal TRAM domain predicted to bind RNA and deliver the RNA-modifying enzymatic domain to their targets, and a C-terminal tRNA (Uracil-5-)-methyltransferase domain that displays the typical SAM-dependent methyltransferase fold; Belongs to the RNA M5U methyltransferase family; Localized in the cytoplasm; High confidence in function and specificity. (478 aa) |
| | CAZ97267.1 | Possible RNA methylase; Protein of unknown function that contains a N-terminal THUMP (thiouridine synthases, RNA methylases and pseudouridine) domain involved in RNA metabolism with a predicted RNA-binding capacity. Also contains a C-terminal Methylase domain; Belongs to the UPF0020 family; Localized in the cytoplasm; Function unclear. (384 aa) |
| | CAZ97194.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (170 aa) |
| | thrS | Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (648 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (515 aa) |
| | tgt | Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...] (386 aa) |
| | CAZ97153.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (209 aa) |
| | rluF | Enzyme responsible for synthesis of pseudouridine from uracil-2604 in 23S ribosomal RNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Contains a N-terminal S4 RNA-binding domain that probably mediates binding to RNA; Belongs to the pseudouridine synthase RsuA family; localized in the cytoplasm; High confidence in function and specificity. (242 aa) |
| | yqgF | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (159 aa) |
| | priA | Primosomal protein N' (replication factor Y); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (817 aa) |
| | CAZ97046.1 | YrdC family protein; Conserved protein belonging to the YrdC family. The YrdC protein from E. coli forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands. YrdC was shown to binds double-stranded RNA. Its exact function is unclear. Localized in the cytoplasm; Function unclear; Belongs to the SUA5 family. (186 aa) |
| | cca | Multifunctional CCA protein; CcA catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows highest phosphatase activity in the presence of Ni(2+) and hydrolyzes pyrophosphate, canonical 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi. Displays a metal-independent phosphodiesterase activity toward 2',3'-cAMP, 2',3'-cGMP, and 2' [...] (474 aa) |
| | nusB | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (304 aa) |
| | csaA | CsaA could serves as a molecular chaperone for exported proteins or alternatively acts by stabilizing the secA protein. Belongs to a putative tRNA binding domain family. Localized in the cytoplasm; Function unclear. (112 aa) |
| | CAZ96968.1 | Conserved protein belonging to the DUF752 family. Localized in the cytoplasm; Conserved hypothetical protein. (219 aa) |
| | truA1 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (250 aa) |
| | rho | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (557 aa) |
| | proS | Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). (491 aa) |
| | cysS | Cysteinyl-tRNA synthetase catalyzes the attachment of cysteine to its cognate transfer RNA molecule in a highly specific two-step reaction. It is a monomer and belongs to the class I of the aminoacyl-tRNA synthetases. It binds one zinc ion as cofactor. Localized in the cytoplasm; High confidence in function and specificity. (492 aa) |
| | CAZ96889.1 | Conserved hypothetical protein. Localized in the cytoplasm. (274 aa) |
| | traP | TraP is part of a conjugative transposon ans is predicted as a transfer primase. Contains an N-terminal CHC2 (CycHisCysCys type) zinc finger domain suggesting that this protein binds to substrates as DNA, RNA. Localized in the cytoplasm; Function unclear. (277 aa) |
| | CAZ96805.1 | Conserved hypothetical protein; Contains an N-terminal PHP (Polymerase and Histidinol Phosphatase) domain which is a putative phosphoesterase domain and a putative C-terminal ABC (ATP-binding cassette) transporter, ABC ATPase domain; Could belong to the PHP superfamily; Localized in the cytoplasm. (670 aa) |
| | CAZ96717.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (170 aa) |
| | argS | Arginyl-tRNA synthetase also called Arginine-tRNA ligase is a monomeric enzyme that catalyzes the transfer of arginine to specific tRNA molecule as the first step in protein biosynthesis; Belongs to the class-I aminoacyl-tRNA synthetase family; Localized in the cytoplasm; High confidence in function and specificity. (594 aa) |
| | rpoA | DNA-dependent RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (330 aa) |
| | rlmB | 23S rRNA (guanosine-2'-O-)-methyltransferase; RmlB specifically methylates the 2' hydroxy group of the ribose of guanosine 2251 in 23S rRNA, using the S-AdoMet; Contains a N-terminal RNA 2'-O ribose methyltransferase substrate binding domain and a C-terminal catalytic domain also involved in the dimer formation that adopts an alpha/beta knot fold; Belongs to the RNA methyltransferase TrmH family; Localized in the cytoplasm; High confidence in function and specificity. (248 aa) |
| | CAZ96620.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to promoters and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra- cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Belongs to the sigma-70 factor family, ECF subfamily; Localized [...] (214 aa) |
| | CAZ96589.1 | tRNA/rRNA methyltransferase; Catalyzes the site-specific methylation of the 2' hydroxy group of the ribose in rRNA or tRNA, using the S-AdoMet; Contains a N-terminal RNA 2'-O ribose methyltransferase substrate binding domain and a C-terminal catalytic domain also involved in the dimer formation that adopts an alpha/beta knot fold; Belongs to the RNA methyltransferase TrmH family; Localized in the cytoplasm; Family membership. (179 aa) |
| | CAZ96550.1 | Hypothetical protein that belongs to the family 22 of the metallopeptidases (M22), but lacks the two conserved catalytic histidines which bind the zinc ion; Localized in the cytoplasm; Family membership. (224 aa) |
| | queG | 4Fe-4S ferredoxin; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (306 aa) |
| | nusA | Transcription termination factor NusA; Participates in both transcription termination and antitermination. (410 aa) |
| | AsnS | AsparaginyltRNA synthetase catalyse the attachment of the aminoacid asparagine to the 3'-hydroxyl of the tRNA. It is an homodimer; Belongs to the class-II aminoacyl-tRNA synthetase family; Localized in the cytoplasm; High confidence in function and specificity. (477 aa) |
| | rpoN | RNA polymerase sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. sigma-54 factors consist of three distinct regions: A conserved N-terminal glutamine-rich region (50 aa) that contains a potential leucine zipper motif. A region which is not conserved. A conserved C-terminal region (350 aa) that contains a second potential leucine zipper, a potential DNA-binding 'helix-turn-helix' motif and a perfectly conserved octapeptide whose function is not known; Localized in the cytoplasm; High confidenc [...] (486 aa) |
| | CAZ96472.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (184 aa) |
| | CAZ96464.1 | Hypothetical protein; Peptide that represents a C-terminal fragment of putative sialic-acid O-acetylesterase; Localized in the cytoplasm. (55 aa) |
| | CAZ95064.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (199 aa) |
| | CAZ95072.1 | Glycoside hydrolase, family GH18; Glycoside hydrolase with an unknown substrate specificity. It is a modular enzyme displaying a N-terminal catalytic module belonging to the family 18 of the glycoside hydrolases (GH18) and two C-terminal carbohydrate binding modules belonging to the family 5 of the carbohydrate binding modules that mainly bind to the cellulose and chitin; Contains a prokaryotic lipoprotein signal peptide cleaved between the residues 20 and 21; Localized in the outer membrane; Specificity unclear. (527 aa) |
| | CAZ95116.1 | RNA polymerase ECF-type sigma factor; Sigma factors are initiation factors of transcription that promote the attachment of RNA polymerase to specific initiation sites (promoters) and are then released; They alter the specificity of promoter recognition; This family represents a group of sigma factors that are able to regulate extra cellular function (ECF). ECF-sigma factors all retain two features: the ability to respond to extra-cytoplasmic functions via the TonB-dependent transducer genes, and regulation by anti-sigma and anti-anti-sigma factors; Family membership. (192 aa) |
| | miaB | MiaB-like tRNA modifying protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. (481 aa) |
| | trmD | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (224 aa) |
| | rluB | Enzyme responsible for synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA by rotation of the C1'-N-1 glycosidic bond of uridine to a C1'-C5; Contains a N-terminal S4 RNA-binding domain that probably mediates binding to RNA; Belongs to the pseudouridine synthase RsuA family; localized in the cytoplasm; High confidence in function and specificity. (234 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (222 aa) |
| | tyrS | Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (431 aa) |
| | leuS | Leucyl-tRNA synthetase catalyses the attachment of leucine to its cognate transfer RNA molecule in a highly specific two-step reaction. Belongs to the class I of the aminoacyl-tRNA synthetases. It is a monomer and adopts a Rossmann fold. Localized in the cytoplasm; High confidence in function and specificity. (978 aa) |
