STRINGSTRING
xylB xylB xylA xylA ADQ04136.1 ADQ04136.1 rhaA rhaA ADQ04148.1 ADQ04148.1 ADQ04264.1 ADQ04264.1 ADQ05438.1 ADQ05438.1 ADQ05439.1 ADQ05439.1 araB araB xylB-2 xylB-2 ADQ05664.1 ADQ05664.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xylBXylulokinase; KEGG: ate:Athe_0567 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like. (502 aa)
xylATIGRFAM: xylose isomerase; KEGG: ate:Athe_0603 xylose isomerase; PFAM: Xylose isomerase domain-containing protein TIM barrel; Belongs to the xylose isomerase family. (438 aa)
ADQ04136.1PFAM: class II aldolase/adducin family protein; KEGG: ate:Athe_0695 class II aldolase/adducin family protein. (428 aa)
rhaATIGRFAM: L-rhamnose isomerase; KEGG: ate:Athe_0706 L-rhamnose isomerase; PFAM: L-rhamnose isomerase. (426 aa)
ADQ04148.1KEGG: ate:Athe_0707 L-fucose isomerase-like protein. (494 aa)
ADQ04264.1PFAM: Carbohydrate kinase, FGGY-like; KEGG: ate:Athe_0841 carbohydrate kinase FGGY. (473 aa)
ADQ05438.1PFAM: class II aldolase/adducin family protein; KEGG: csc:Csac_0723 L-ribulose-5-phosphate 4-epimerase. (214 aa)
ADQ05439.1Transcriptional regulator, GntR family with LacI sensor; KEGG: csc:Csac_0722 regulatory protein GntR, HTH; PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH. (374 aa)
araBL-ribulokinase; KEGG: ate:Athe_2229 L-ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like. (556 aa)
xylB-2PFAM: Carbohydrate kinase, FGGY-like; KEGG: ate:Athe_2391 carbohydrate kinase FGGY. (497 aa)
ADQ05664.1PFAM: class II aldolase/adducin family protein; KEGG: csc:Csac_0425 class II aldolase/adducin family protein. (213 aa)
Your Current Organism:
Caldicellulosiruptor owensensis
NCBI taxonomy Id: 632518
Other names: C. owensensis OL, Caldicellulosiruptor owensensis DSM 13100, Caldicellulosiruptor owensensis OL, Caldicellulosiruptor owensensis str. OL, Caldicellulosiruptor owensensis strain OL
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