Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADQ04636.1 | ADQ04640.1 | Calow_1073 | Calow_1077 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: ate:Athe_1286 acid phosphatase/vanadium-dependent haloperoxidase related. | 0.609 |
| ADQ04636.1 | ADQ04883.1 | Calow_1073 | Calow_1326 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.663 |
| ADQ04636.1 | ADQ04889.1 | Calow_1073 | Calow_1332 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.478 |
| ADQ04636.1 | lepA | Calow_1073 | Calow_1333 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.430 |
| ADQ04636.1 | prmA | Calow_1073 | Calow_1327 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.691 |
| ADQ04636.1 | thiI | Calow_1073 | Calow_1324 | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.401 |
| ADQ04640.1 | ADQ04636.1 | Calow_1077 | Calow_1073 | PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: ate:Athe_1286 acid phosphatase/vanadium-dependent haloperoxidase related. | TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; KEGG: ate:Athe_1282 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB. | 0.609 |
| ADQ04878.1 | ADQ04879.1 | Calow_1321 | Calow_1322 | KEGG: ate:Athe_1543 hypothetical protein. | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | 0.538 |
| ADQ04878.1 | ADQ04880.1 | Calow_1321 | Calow_1323 | KEGG: ate:Athe_1543 hypothetical protein. | Manually curated; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: ate:Athe_1545 pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family. | 0.536 |
| ADQ04878.1 | ADQ04882.1 | Calow_1321 | Calow_1325 | KEGG: ate:Athe_1543 hypothetical protein. | PFAM: aminotransferase class V; KEGG: ate:Athe_1547 aminotransferase class V. | 0.516 |
| ADQ04878.1 | ADQ04883.1 | Calow_1321 | Calow_1326 | KEGG: ate:Athe_1543 hypothetical protein. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.494 |
| ADQ04878.1 | prmA | Calow_1321 | Calow_1327 | KEGG: ate:Athe_1543 hypothetical protein. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.494 |
| ADQ04878.1 | thiI | Calow_1321 | Calow_1324 | KEGG: ate:Athe_1543 hypothetical protein. | Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.536 |
| ADQ04879.1 | ADQ04878.1 | Calow_1322 | Calow_1321 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | KEGG: ate:Athe_1543 hypothetical protein. | 0.538 |
| ADQ04879.1 | ADQ04880.1 | Calow_1322 | Calow_1323 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | Manually curated; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: ate:Athe_1545 pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family. | 0.782 |
| ADQ04879.1 | ADQ04882.1 | Calow_1322 | Calow_1325 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | PFAM: aminotransferase class V; KEGG: ate:Athe_1547 aminotransferase class V. | 0.748 |
| ADQ04879.1 | ADQ04883.1 | Calow_1322 | Calow_1326 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.713 |
| ADQ04879.1 | prmA | Calow_1322 | Calow_1327 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.719 |
| ADQ04879.1 | thiI | Calow_1322 | Calow_1324 | PFAM: peptidase M29 aminopeptidase II; KEGG: ate:Athe_1544 peptidase M29 aminopeptidase II. | Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.780 |
| ADQ04880.1 | ADQ04878.1 | Calow_1323 | Calow_1321 | Manually curated; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: ate:Athe_1545 pseudouridine synthase; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RsuA family. | KEGG: ate:Athe_1543 hypothetical protein. | 0.536 |
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