STRINGSTRING
ROP_53770 ROP_53770 ROP_53780 ROP_53780 ROP_53790 ROP_53790 thcD thcD thcC thcC ROP_53820 ROP_53820
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ROP_53770Putative MarR family transcriptional regulator. (166 aa)
ROP_53780Hypothetical protein. (75 aa)
ROP_53790Hypothetical protein. (210 aa)
thcDRhodocoxin reductase. (426 aa)
thcCRhodocoxin. (107 aa)
ROP_53820Hypothetical protein. (103 aa)
Your Current Organism:
Rhodococcus opacus
NCBI taxonomy Id: 632772
Other names: R. opacus B4, Rhodococcus opacus B4, Rhodococcus opacus str. B4, Rhodococcus opacus strain B4
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