STRINGSTRING
Olsu_0320 Olsu_0320 Olsu_0416 Olsu_0416 rho rho Olsu_0985 Olsu_0985 sigA sigA rpoA rpoA rpoC rpoC rpoB rpoB nusG nusG greA greA mfd mfd
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Olsu_0320Transcriptional regulator, MerR family; COGs: COG0789 transcriptional regulator protein; InterPro IPR000551:IPR009061:IPR011256; KEGG: cbt:CLH_1370 transcriptional regulatory protein; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: C2CIK4 MerR family transcriptional regulator; PFAM: MerR, DNA binding; MerR family regulatory protein; Bacterial transcription activator, effector binding domain. (285 aa)
Olsu_0416SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterProIPR007527:IPR013663:IPR000330:IPR001650:IPR 014001:IPR014021; KEGG: shi:Shel_14860 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2-related protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: C7N6H1 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; Bacterial SNF2 helicase associated; SNF2 family N-terminal domain. (1079 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (683 aa)
Olsu_0985RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (97 aa)
sigARNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (453 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (313 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1476 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1171 aa)
nusGTranscription antitermination protein nusG; Participates in transcription elongation, termination and antitermination. (182 aa)
greAGreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (157 aa)
mfdTranscription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1171 aa)
Your Current Organism:
Olsenella uli
NCBI taxonomy Id: 633147
Other names: O. uli DSM 7084, Olsenella uli ATCC 49627, Olsenella uli DSM 7084, Olsenella uli str. DSM 7084, Olsenella uli strain DSM 7084
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