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| | rpmH | LSU ribosomal protein L34P; InterPro IPR000271; KEGG: shi:Shel_28540 LSU ribosomal protein L34P; PFAM: ribosomal protein L34; SPTR: A4ECS2 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | Olsu_1497 | Peptidase M16C associated domain protein; COGs: COG1026 Zn-dependent peptidase insulinase-like; InterProIPR011237:IPR011765:IPR007863:IPR013578:IPR 011249; KEGG: apv:Apar_0378 peptidase M16C associated domain protein; PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; SPTR: B9CNS2 Zn-dependent peptidase, insulinase family; PFAM: Peptidase M16C associated; Peptidase M16 inactive domain; Insulinase (Peptidase family M16); TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. (988 aa) |
| | TMPRSS13 | KEGG: TMPRSS13; transmembrane protease, serine 13; K09643 transmembrane protease, serine 13; SPTR: B6GAG0 Putative uncharacterized protein (Fragment). (107 aa) |
| | leuA | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. (511 aa) |
| | Olsu_1548 | NUDIX hydrolase; COGs: COG2816 NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding; InterPro IPR015376:IPR000086:IPR015797:IPR020084; KEGG: shi:Shel_19860 Zn-finger containing NTP pyrophosphohydrolase; PFAM: NUDIX hydrolase; Zinc ribbon NADH pyrophosphatase; SPTR: B5CLJ4 Putative uncharacterized protein; PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain. (281 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (284 aa) |
| | Olsu_1580 | COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: apv:Apar_1132 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: C2D964 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family. (175 aa) |
| | rpsD | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (197 aa) |
| | rpsK | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (133 aa) |
| | rpsM | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (123 aa) |
| | rpmJ | LSU ribosomal protein L36P; InterPro IPR000473:IPR000923; KEGG: apv:Apar_1137 ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: C8W7X5 Ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | adk | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (208 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (148 aa) |
| | rpmD | LSU ribosomal protein L30P; InterPro IPR000517:IPR016082:IPR005996; KEGG: apv:Apar_1143 ribosomal protein L30; PFAM: ribosomal protein L30; SPTR: C2D974 Putative uncharacterized protein; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. (63 aa) |
| | rpsE | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (173 aa) |
| | rplR | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (122 aa) |
| | rplF | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa) |
| | rpsH | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsZ | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rplE | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (185 aa) |
| | rplX | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa) |
| | rpmC | LSU ribosomal protein L29P; InterPro IPR001854; KEGG: apv:Apar_1153 ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: C2D989 Ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (71 aa) |
| | rplP | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (141 aa) |
| | rpsC | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (236 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (120 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (86 aa) |
| | rplB | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (101 aa) |
| | rplD | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (208 aa) |
| | rplC | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (206 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rpsG | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (171 aa) |
| | rplA | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (235 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rpmG | COGs: COG0267 Ribosomal protein L33; InterPro IPR001705:IPR018264; KEGG: apv:Apar_1177 ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: C2D9B8 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | Olsu_1636 | ATPase AAA-2 domain protein; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR004176:IPR003959:IPR001943:IPR013093:IPR 019489:IPR001270:IPR018368:IPR003593; KEGG: apv:Apar_1186 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; Clp domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: B9CLB4 ClpC ATPase; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC mot [...] (870 aa) |
| | Olsu_1643 | Cupin 2 conserved barrel domain protein; InterPro IPR013096:IPR011051; KEGG: ccu:Ccur_09790 cupin domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: C7MP30 Cupin domain-containing protein; PFAM: Cupin domain. (252 aa) |
| | ispE | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (318 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (231 aa) |
| | Olsu_1712 | COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterProIPR000277:IPR015424:IPR015421:IPR015422:IPR 006235; KEGG: cag:Cagg_0970 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: B8G6F1 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase. (439 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (207 aa) |
| | Olsu_1719 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (102 aa) |
| | Olsu_1775 | DNA gyrase subunit B; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterProIPR003594:IPR013506:IPR006171:IPR002288:IPR 013760:IPR020568:IPR014721:IPR013759:IPR011557:IPR001241:I PR000565:IPR018522; KEGG: apv:Apar_0006 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: C4FB30 DNA gyrase s [...] (667 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (362 aa) |
| | Olsu_0001 | COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: apv:Apar_1363 cobyrinic acid ac-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; SPTR: B9CLR4 SpoOJ regulator protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (266 aa) |
| | Olsu_0002 | parB-like partition protein; COGs: COG1475 transcriptional regulator protein; InterPro IPR003115:IPR004437; KEGG: apv:Apar_1362 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: B9CLR3 Stage 0 sporulation protein J; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (275 aa) |
| | Olsu_0005 | DNA polymerase III, epsilon subunit; COGs: COG1199 Rad3-related DNA helicase; InterProIPR012337:IPR006054:IPR014013:IPR006055:IPR 006555:IPR002345:IPR013520; KEGG: apv:Apar_1359 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; helicase c2; SPTR: C8W8J2 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DnaQ family exonuclease/DinG family helicase, putative. (1001 aa) |
| | rpsF | SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (97 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (90 aa) |
| | Olsu_0027 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (464 aa) |
| | purD | COGs: COG0151 Phosphoribosylamine-glycine ligase; InterProIPR011054:IPR016185:IPR000115:IPR011761:IPR 013817:IPR013815:IPR013816:IPR020560:IPR020559:IPR020562:I PR020561; KEGG: apv:Apar_0026 phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: C8W8M7 Phosphoribosylamine/glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribo [...] (431 aa) |
| | purF | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (516 aa) |
| | Olsu_0049 | PRC-barrel domain protein; InterPro IPR007903; KEGG: apv:Apar_0067 hypothetical protein; PFAM: PRC-barrel domain protein; SPTR: B9CLZ0 Putative uncharacterized protein; PFAM: PRC-barrel domain. (342 aa) |
| | Olsu_0051 | COGs: COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain); InterProIPR011002:IPR011033:IPR006669:IPR000644:IPR 007903:IPR006668; KEGG: apv:Apar_0069 MgtE intracellular region; PFAM: MgtE intracellular region; PRC-barrel domain protein; CBS domain containing protein; SPTR: C2D9Q0 MgtE intracellular domain protein; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular N domain; CBS domain; PRC-barrel domain; TIGRFAM: Mg2+ transporter (mgtE). (613 aa) |
| | Olsu_0057 | COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lrh:LGG_00405 transketolase, N-terminal subunit; PFAM: Transketolase domain protein; SPTR: C2D9D5 Transketolase; PFAM: Transketolase, thiamine diphosphate binding domain. (284 aa) |
| | deoC | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (213 aa) |
| | tadA | tRNA-adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (163 aa) |
| | clpB | ATP-dependent chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (883 aa) |
| | Olsu_0088 | Beta-lactamase domain protein; COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: apv:Apar_0105 beta-lactamase domain protein; SPTR: B9CMA1 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily. (274 aa) |
| | Olsu_0097 | Silent information regulator protein Sir2; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: cpf:CPF_0249 NAD-dependent deacetylase; PFAM: Silent information regulator protein Sir2; SPTR: A4EBP4 Putative uncharacterized protein; PFAM: Sir2 family. (247 aa) |
| | Olsu_0101 | COGs: COG0294 Dihydropteroate synthase; InterPro IPR011005:IPR000550:IPR006390:IPR000489; KEGG: apv:Apar_0111 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; SPTR: B9CMA7 Dihydropteroate synthase 1; TIGRFAM: dihydropteroate synthase; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: Pterin binding enzyme; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: dihydropteroate synthase; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. (479 aa) |
| | rpmE | LSU ribosomal protein L31P; Binds the 23S rRNA. (145 aa) |
| | Olsu_0107 | Protein of unknown function UPF0047; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: sds:SDEG_0310 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: C2D6W8 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0047. (173 aa) |
| | Olsu_0111 | Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: cdf:CD0045 putative sugar-phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: B9CMD8 L-ribulose-5-phosphate 4-epimerase; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase. (226 aa) |
| | Olsu_0130 | KEGG: hypothetical protein; SPTR: C0FMA3 Putative uncharacterized protein. (340 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (146 aa) |
| | rpsI | COGs: COG0103 Ribosomal protein S9; InterPro IPR020568:IPR014721:IPR020574:IPR000754; KEGG: apv:Apar_1249 ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: C8W884 Ribosomal protein S9; PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (131 aa) |
| | Olsu_0174 | InterPro IPR011051:IPR014710:IPR013096; KEGG: swi:Swit_5057 cupin 2 domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: A5VHA4 Cupin 2, conserved barrel domain protein; PFAM: Cupin domain. (117 aa) |
| | Olsu_0179 | COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: cbe:Cbei_2230 enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: A6LVL5 Enoyl-CoA hydratase/isomerase; PFAM: Enoyl-CoA hydratase/isomerase family. (337 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (353 aa) |
| | Olsu_0253 | Conserved hypothetical protein; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: shi:Shel_21050 hypothetical protein; SPTR: C9LYS2 SIR2 family protein. (289 aa) |
| | Olsu_0261 | KEGG: cpy:Cphy_0467 hypothetical protein; SPTR: C5ES31 Putative uncharacterized protein. (245 aa) |
| | Olsu_0267 | Conserved hypothetical protein; COGs: COG4260 Putative virion core protein (lumpy skin disease virus); KEGG: lsp:Bsph_3109 hypothetical protein; SPTR: B0NF62 Putative uncharacterized protein; PFAM: SPFH domain / Band 7 family. (478 aa) |
| | Olsu_0274 | COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; KEGG: apv:Apar_0213 putative protein-S-isoprenylcysteine methyltransferase-like protein; SPTR: B9CN26 Putative uncharacterized protein; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family. (165 aa) |
| | Olsu_0303 | Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: cbk:CLL_A1450 propanediol utilization protein PduA; PFAM: microcompartments protein; SPTR: B2TJR1 Propanediol utilization protein PduA; PFAM: BMC domain. (99 aa) |
| | Olsu_0304 | Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like; PFAM: microcompartments protein; SPTR: C0D5P4 Putative uncharacterized protein; PFAM: BMC domain. (103 aa) |
| | Olsu_0308 | KEGG: drm:Dred_3274 hypothetical protein; SPTR: A4J9M1 Putative uncharacterized protein. (207 aa) |
| | Olsu_0310 | KEGG: amt:Amet_3830 microcompartments protein; SPTR: C2CIJ4 Microcompartments protein; PFAM: BMC domain. (101 aa) |
| | Olsu_0311 | COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: aoe:Clos_2392 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: C7HVW9 Carbon dioxide concentrating mechanism protein CcmL; PFAM: Ethanolamine utilisation protein EutN/carboxysome. (89 aa) |
| | Olsu_0312 | COGs: COG4869 Propanediol utilization protein; InterPro IPR008300; KEGG: cpy:Cphy_1429 propanediol utilization protein; PFAM: Propanediol utilization protein; SPTR: C5EE91 Propanediol utilization protein; PFAM: Propanediol utilisation protein PduL. (300 aa) |
| | Olsu_0313 | Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cpy:Cphy_2641 microcompartments protein; PFAM: microcompartments protein; SPTR: A9KMZ1 Microcompartments protein; PFAM: BMC domain. (94 aa) |
| | Olsu_0314 | Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: dsa:Desal_0472 microcompartments protein; PFAM: microcompartments protein; SPTR: C6BX59 Microcompartments protein; PFAM: BMC domain. (95 aa) |
| | Olsu_0315 | Microcompartments protein; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR020808:IPR000249; KEGG: cpy:Cphy_2641 microcompartments protein; PFAM: microcompartments protein; SPTR: C7HVW6 Ribonuclease III; PFAM: BMC domain. (94 aa) |
| | Olsu_0317 | Tetratricopeptide TPR_4; InterPro IPR011717:IPR019734:IPR011990:IPR013026; KEGG: ter:Tery_3497 peptidase-like; PFAM: Tetratricopeptide TPR_4; SPTR: C7HVW3 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat. (263 aa) |
| | Olsu_0318 | KEGG: pca:Pcar_0934 hypothetical protein; SPTR: Q3A620 Putative uncharacterized protein. (313 aa) |
| | Olsu_0322 | COGs: COG4810 Ethanolamine utilization protein; InterPro IPR000249; KEGG: cbe:Cbei_4064 microcompartments protein; PFAM: microcompartments protein; SPTR: A6P0P5 Putative uncharacterized protein; PFAM: BMC domain. (120 aa) |
| | Olsu_0323 | COGs: COG4810 Ethanolamine utilization protein; InterPro IPR000249; KEGG: dds:Ddes_1372 microcompartments protein; PFAM: microcompartments protein; SPTR: A7AYD4 Putative uncharacterized protein; PFAM: BMC domain. (144 aa) |
| | Olsu_0324 | Conserved hypothetical protein; COGs: COG4917 Ethanolamine utilization protein; InterPro IPR012381; KEGG: ckr:CKR_3021 hypothetical protein; SPTR: C6JCW8 Putative uncharacterized protein; PFAM: Ethanolamine utilisation - propanediol utilisation; TIGRFAM: ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family. (163 aa) |
| | Olsu_0329 | ATPase; InterPro IPR000463; KEGG: shi:Shel_02770 ATPase; SPTR: C4F944 Putative uncharacterized protein; PFAM: Archaeal ATPase. (384 aa) |
| | Olsu_0373 | KEGG: shi:Shel_09730 hypothetical protein; SPTR: A4ED19 Putative uncharacterized protein. (244 aa) |
| | Olsu_0374 | Conserved hypothetical protein; COGs: COG4260 Putative virion core protein (lumpy skin disease virus); InterPro IPR013032; KEGG: ele:Elen_2535 hypothetical protein; SPTR: A4ED21 Putative uncharacterized protein. (401 aa) |
| | Olsu_0398 | Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: cdf:CD2277 sugar phosphate aldolase; PFAM: class II aldolase/adducin family protein; SPTR: B0MFP7 Putative uncharacterized protein; PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: L-ribulose-5-phosphate 4-epimerase. (222 aa) |
| | Olsu_0416 | SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterProIPR007527:IPR013663:IPR000330:IPR001650:IPR 014001:IPR014021; KEGG: shi:Shel_14860 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: SNF2-related protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: C7N6H1 DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; Bacterial SNF2 helicase associated; SNF2 family N-terminal domain. (1079 aa) |
| | Olsu_0422 | methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (198 aa) |
| | deoC-2 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (236 aa) |
| | Olsu_0435 | PTS system, glucose subfamily, IIA subunit; COGs: COG1263 Phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR018114:IPR001127:IPR018113:IPR003352:IPR 011535:IPR011055:IPR001996:IPR013013; KEGG: stc:str1734 sucrose-specific PTS permease, enzyme II; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B9CM50 Pts system beta-glucoside-specific eiibca component; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; [...] (658 aa) |
| | Olsu_0446 | Hypothetical protein; KEGG: dystonin, GAS (Growth-arrest-specific protein), and related proteins; SPTR: C7V051 Predicted protein. (492 aa) |
| | Olsu_0447 | Hypothetical protein; KEGG: cph:Cpha266_1614 restriction endonuclease; SPTR: A1BGV8 Restriction endonuclease. (318 aa) |
| | Olsu_0450 | IstB domain protein ATP-binding protein; InterPro IPR002611; KEGG: car:cauri_2515 putative transposase; PFAM: IstB domain protein ATP-binding protein; SPTR: C0XQV6 AAA-superfamily ATP binding protein; PFAM: IstB-like ATP binding protein. (255 aa) |
| | Olsu_0487 | Phosphotransferase system EIIB/cysteine, phosphorylation site; COGs: COG1264 Phosphotransferase system IIB components; InterPro IPR018113:IPR001996; KEGG: bpu:BPUM_0209 PTS family glucose/glucoside (glc) porter component IIBCA; PFAM: Phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B7CB01 Putative uncharacterized protein; PFAM: phosphotransferase system, EIIB. (284 aa) |
| | Olsu_0503 | DEAD/DEAH box helicase domain protein; COGs: COG4581 Superfamily II RNA helicase; InterProIPR000209:IPR011545:IPR001650:IPR014001:IPR 014021; KEGG: ele:Elen_1453 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: C8WH31 DEAD/DEAH box helicase domain protein; PFAM: Domain of unknown function (DUF3516); Helicase conserved C-terminal domain; DEAD/DEAH box helicase. (858 aa) |
| | Olsu_0510 | Orn/DAP/Arg decarboxylase 2; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183:IPR009006; KEGG: shi:Shel_17190 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: C2D864 Possible diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain. (401 aa) |
| | Olsu_0512 | COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterProIPR000277:IPR006235:IPR015424:IPR015421:IPR 015422; KEGG: ele:Elen_0295 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: O-acetylhomoserine aminocarboxypropyltransferase; SPTR: C4F806 Putative uncharacterized protein; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase. (425 aa) |
| | Olsu_0523 | COGs: COG0183 Acetyl-CoA acetyltransferase; InterPro IPR002155:IPR016039:IPR016038; KEGG: mka:MK1378 acetyl-CoA acetyltransferase; SPTR: C5EG38 Acetyl-CoA acetyltransferase; PFAM: Beta-ketoacyl synthase, N-terminal domain. (429 aa) |
| | Olsu_0524 | Protein of unknown function DUF35; COGs: COG1545 nucleic-acid-binding protein containing a Zn-ribbon; InterPro IPR002878; KEGG: afu:AF0284 hypothetical protein; PFAM: protein of unknown function DUF35; SPTR: C5EG37 Predicted protein; PFAM: DUF35 OB-fold domain. (156 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (154 aa) |
| | Olsu_0550 | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein; COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006140:IPR006139:IPR016040; KEGG: apv:Apar_1039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: B9CMV8 D-lactate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. (333 aa) |
| | Olsu_0554 | Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR017975:IPR001482; KEGG: apv:Apar_1034 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: C2D730 Type II secretion system protein E; PFAM: Type II/IV secretion system protein. (444 aa) |
| | Olsu_0576 | COGs: COG2939 Carboxypeptidase C (cathepsin A); InterPro IPR001563; KEGG: blt:Balat_0443 carboxypeptidase C; PFAM: peptidase S10 serine carboxypeptidase; SPTR: C2D7D7 Carboxypeptidase C; PFAM: Serine carboxypeptidase. (529 aa) |
| | Olsu_0579 | Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterPro IPR016066:IPR005844:IPR005845:IPR016055; KEGG: apv:Apar_1013 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: B9CL65 Phosphoglucomutase/phosphomannomutase family protein; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucom [...] (573 aa) |
| | cutC-2 | CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (231 aa) |
| | Olsu_0671 | Alcohol dehydrogenase zinc-binding domain protein; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR013154:IPR013149:IPR002328:IPR011032:IPR 016040; KEGG: tde:TDE0075 sorbitol dehydrogenase, putative; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: B0NED0 Putative uncharacterized protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase. (347 aa) |
| | Olsu_0687 | Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (422 aa) |
| | Olsu_0688 | SufBD protein; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825; KEGG: apv:Apar_0400 SufBD protein; PFAM: SufBD protein; SPTR: C2D6T8 Putative uncharacterized protein; PFAM: Uncharacterized protein family (UPF0051). (437 aa) |
| | Olsu_0689 | Iron-regulated ABC transporter membrane component SufB; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825:IPR010231; KEGG: apv:Apar_0401 FeS assembly protein SufB; PFAM: SufBD protein; SPTR: B9CL14 FeS assembly protein SufB; TIGRFAM: FeS assembly protein SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB. (485 aa) |
| | Olsu_0690 | Iron-regulated ABC transporter ATPase subunit SufC; COGs: COG0396 ABC-type transport system involved in Fe-S cluster assembly ATPase component; InterPro IPR003439:IPR017871:IPR010230; KEGG: apv:Apar_0402 FeS assembly ATPase SufC; PFAM: ABC transporter related; SPTR: C2D6U0 ABC superfamily ATP binding cassette transporter, ABC protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC. (254 aa) |
| | Olsu_0712 | Conserved hypothetical protein; InterPro IPR011990:IPR019734:IPR013026; KEGG: apv:Apar_0887 hypothetical protein; SPTR: B9CK29 Tetratricopeptide repeat domain protein. (883 aa) |
| | serC | Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (392 aa) |
| | Olsu_0720 | ABC-1 domain protein; COGs: COG0661 unusual protein kinase; InterPro IPR004147:IPR011009; KEGG: bln:Blon_0231 ABC-1 domain protein; PFAM: ABC-1 domain protein; SPTR: A7A3C6 Putative uncharacterized protein; PFAM: ABC1 family. (582 aa) |
| | rpmI | LSU ribosomal protein L35P; InterPro IPR001706:IPR018265; KEGG: apv:Apar_0523 ribosomal protein L35; PFAM: ribosomal protein L35; SPTR: C2D7Q2 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (121 aa) |
| | fhs | Formate-tetrahydrofolate ligase; COGs: COG2759 Formyltetrahydrofolate synthetase; InterPro IPR000559:IPR020628; KEGG: apv:Apar_0621 formate--tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; PRIAM: Formate--tetrahydrofolate ligase; SPTR: B9CK23 Formate--tetrahydrofolate ligase; PFAM: Formate--tetrahydrofolate ligase. (558 aa) |
| | Olsu_0792 | Formiminotransferase-cyclodeaminase; COGs: COG3404 Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR007044; KEGG: dsy:DSY0606 hypothetical protein; PFAM: Formiminotransferase-cyclodeaminase; SPTR: B0NCT3 Putative uncharacterized protein; PFAM: Formiminotransferase-cyclodeaminase. (212 aa) |
| | Olsu_0794 | FolC bifunctional protein; COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR013221:IPR004101:IPR001645; KEGG: apv:Apar_0625 FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; PRIAM: Tetrahydrofolate synthase; SPTR: B9CJX4 Folylpolyglutamate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase. (471 aa) |
| | Olsu_0801 | Cys/Met metabolism pyridoxal-phosphate-dependent protein; COGs: COG0626 Cystathionine beta-lyase/cystathionine gamma-synthase; InterPro IPR000277:IPR015422:IPR015424; KEGG: apv:Apar_0628 hypothetical protein; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: C8WAC0 Putative uncharacterized protein; PFAM: Cys/Met metabolism PLP-dependent enzyme. (270 aa) |
| | Olsu_0857 | TPR repeat-containing protein; InterPro IPR001440:IPR011990:IPR013026; KEGG: apv:Apar_0669 tetratricopeptide domain protein; PFAM: TPR repeat-containing protein; SPTR: C8WAG0 Tetratricopeptide domain protein. (444 aa) |
| | Olsu_0863 | KEGG: apv:Apar_0675 hypothetical protein; SPTR: B9CK78 Putative uncharacterized protein. (337 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (119 aa) |
| | obg | GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (468 aa) |
| | nadD | Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (237 aa) |
| | rpsP | COGs: COG0228 Ribosomal protein S16; InterPro IPR000307:IPR020592; KEGG: apv:Apar_0688 ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: C8WAH9 Ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (112 aa) |
| | rplS | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (113 aa) |
| | xerC | Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (308 aa) |
| | rpsB | COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR018130:IPR005706; KEGG: apv:Apar_0705 ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: C2D6I7 Ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. (253 aa) |
| | Olsu_0922 | COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR000192:IPR015421:IPR020578:IPR016454:IPR 015424; KEGG: apv:Apar_0732 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: B9CKD2 Cysteine desulfurase; PFAM: Aminotransferase class-V. (390 aa) |
| | Olsu_0931 | methylated-DNA/protein- cysteinemethyltransferase; COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR001497:IPR011991; KEGG: ccu:Ccur_10170 O-6-methylguanine DNA methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: B9CKC3 Methylated-dna--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. (104 aa) |
| | Olsu_0944 | Cl- channel voltage-gated family protein; COGs: COG0038 Chloride channel protein EriC; InterPro IPR014743:IPR016040:IPR001807:IPR006037; KEGG: apv:Apar_0757 chloride channel core; PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein; SPTR: B9CK98 Chloride ion channel protein; PFAM: Voltage gated chloride channel; TrkA-C domain. (546 aa) |
| | rpsO | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (92 aa) |
| | recO | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (250 aa) |
| | Olsu_0971 | COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: apv:Apar_0792 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: C2D6D2 Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase. (123 aa) |
| | ybeY | Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (168 aa) |
| | rpsT | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (87 aa) |
| | Olsu_0987 | KEGG: apv:Apar_0809 hypothetical protein; SPTR: B6GCL2 Putative uncharacterized protein. (102 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (646 aa) |
| | Olsu_0999 | Riboflavin biosynthesis protein RibF; COGs: COG0196 FAD synthase; InterPro IPR015865:IPR002606:IPR015864:IPR014729; KEGG: apv:Apar_0826 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; SPTR: C8W715 Riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family. (355 aa) |
| | Olsu_1001 | Phosphoesterase RecJ domain protein; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667:IPR003156; KEGG: apv:Apar_0828 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: B9CNY2 Phosphoesterase, RecJ domain protein; PFAM: DHH family; DHHA1 domain. (339 aa) |
| | Olsu_1031 | TPR repeat-containing protein; InterPro IPR019734:IPR001440:IPR011990; KEGG: paa:Paes_2380 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: A8YKI2 Genome sequencing data, contig C324. (301 aa) |
| | Olsu_1032 | ATPase AAA-2 domain protein; COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterProIPR018368:IPR001270:IPR003593:IPR004176:IPR 003959:IPR013093:IPR019489; KEGG: cyt:cce_1001 ATP-dependent Clp protease, regulatory subunit; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: C2BSH3 ATPase with chaperone activity, ATP-binding subunit; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular ac [...] (761 aa) |
| | smc | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1177 aa) |
| | rpmF | LSU ribosomal protein L32P; InterPro IPR002677; KEGG: apv:Apar_0855 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: C8W744 Ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | rpmB | Ribosomal protein L28; InterPro IPR001383; KEGG: apv:Apar_0863 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: C2D8V6 Possible ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (66 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (769 aa) |
| | Olsu_1109 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (546 aa) |
| | Olsu_1126 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (137 aa) |
| | Olsu_1132 | Recombination protein MgsA; COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR003593:IPR003959; KEGG: apv:Apar_0452 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: B9CP20 Recombination factor protein RarA; PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus. (462 aa) |
| | Olsu_1141 | COGs: COG0714 MoxR-like ATPase; InterPro IPR003593:IPR011704; KEGG: ele:Elen_2494 ATPase associated with various cellular activities AAA_5; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: C8WL70 ATPase associated with various cellular activities AAA_5; PFAM: AAA domain (dynein-related subfamily). (524 aa) |
| | Olsu_1144 | ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: shi:Shel_01920 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7N1H0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (233 aa) |
| | Olsu_1152 | COGs: COG4690 Dipeptidase; InterPro IPR005322; KEGG: bad:BAD_0168 dipeptidase; PFAM: peptidase U34 dipeptidase; SPTR: B6XWR1 Putative uncharacterized protein; PFAM: Peptidase family C69. (515 aa) |
| | Olsu_1168 | Extracellular solute-binding protein family 1; COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR006311:IPR017909:IPR019546:IPR006059; KEGG: apv:Apar_0009 extracellular solute-binding protein family 1; PFAM: extracellular solute-binding protein family 1; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C2D8R4 Iron (Fe3+) ABC superfamily ATP binding cassette transporter, binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (384 aa) |
| | Olsu_1169 | Peptidase M14 carboxypeptidase A; InterPro IPR000834; KEGG: bha:BH3865 hypothetical protein; SMART: peptidase M14 carboxypeptidase A; SPTR: C8P1H1 Putative uncharacterized protein; PFAM: Zinc carboxypeptidase. (1128 aa) |
| | Olsu_1186 | dCMP deaminase; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016193:IPR016192:IPR016473:IPR002125; KEGG: ccu:Ccur_00700 deoxycytidylate deaminase; PFAM: CMP/dCMP deaminase zinc-binding; PRIAM: dCMP deaminase; SPTR: B6GCF9 Putative uncharacterized protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (160 aa) |
| | Olsu_1190 | HhH-GPD family protein; COGs: COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; InterPro IPR011257; KEGG: bpy:Bphyt_2509 HhH-GPD family protein; SPTR: B6G8M1 Putative uncharacterized protein. (165 aa) |
| | Olsu_1211 | PTS system maltose-specific IIB/IIC components; COGs: COG1263 Phosphotransferase system IIC components glucose/maltose/N-acetylglucosamine-specific; InterProIPR001996:IPR018113:IPR010975:IPR011535:IPR 013013:IPR003352; KEGG: cbe:Cbei_4705 PTS system, alpha-glucoside-specific IIBC subunit; PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; SPTR: B6G8F2 Putative uncharacterized protein; TIGRFAM: PTS system, alpha-glucoside-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: Phosphotransferase system, EIIC; phosphotransfera [...] (536 aa) |
| | Olsu_1226 | ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: ccu:Ccur_03360 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B6G7I7 Putative uncharacterized protein; PFAM: ABC transporter. (256 aa) |
| | Olsu_1258 | COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterProIPR015421:IPR018201:IPR000192:IPR016454:IPR 015424; KEGG: apv:Apar_0913 aminotransferase class V; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: B9CP37 Cysteine desulfurase; PFAM: Aminotransferase class-V. (417 aa) |
| | Olsu_1261 | Protein serine phosphatase with GAF(s) sensor(s); COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR003018:IPR010822:IPR001932; KEGG: apv:Apar_0916 putative PAS/PAC sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; SPTR: B9CP42 Stage II sporulation protein E; PFAM: Stage II sporulation protein E (SpoIIE). (761 aa) |
| | Olsu_1270 | COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832:IPR016040:IPR006424:IPR020830:IPR 020828:IPR020829:IPR020831; KEGG: apv:Apar_0924 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: A4ECN5 Putative uncharacterized protein; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase [...] (341 aa) |
| | Olsu_1274 | COGs: COG3663 G:T/U mismatch-specific DNA glycosylase; InterPro IPR005122; KEGG: ccu:Ccur_11950 G:T/U mismatch-specific DNA glycosylase; SPTR: C7MKT3 G:T/U mismatch-specific DNA glycosylase; PFAM: Uracil DNA glycosylase superfamily. (173 aa) |
| | Olsu_1275 | Alcohol dehydrogenase zinc-binding domain protein; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterProIPR002328:IPR013154:IPR013149:IPR011032:IPR 016040; KEGG: lcb:LCABL_29170 zinc-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: B0MCY6 Putative uncharacterized protein; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase. (355 aa) |
| | Olsu_1308 | KEGG: shi:Shel_11550 hypothetical protein; SPTR: C7N5K4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2975). (152 aa) |
| | Olsu_1312 | COGs: COG4690 Dipeptidase; InterPro IPR007110:IPR005322:IPR003599; KEGG: ccu:Ccur_00230 dipeptidase; PFAM: peptidase U34 dipeptidase; SMART: Immunoglobulin subtype; SPTR: A4E7K7 Putative uncharacterized protein; PFAM: Peptidase family C69; TIGRFAM: LPXTG-motif cell wall anchor domain. (721 aa) |
| | Olsu_1326 | COGs: COG0539 Ribosomal protein S1; InterPro IPR003029:IPR000110:IPR012340:IPR016027; KEGG: apv:Apar_0962 RNA binding S1 domain protein; PFAM: RNA binding S1 domain protein; SPTR: C2D7J9 Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1. (392 aa) |
| | rnhA | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (204 aa) |
| | Olsu_1333 | L-glutamine synthetase; COGs: COG3968 Uncharacterized protein related to glutamine synthetase; InterPro IPR014746:IPR008146; KEGG: apv:Apar_1105 glutamine synthetase catalytic region; PFAM: glutamine synthetase catalytic region; SPTR: C2D754 Glutamate--ammonia ligase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase type III N terminal. (696 aa) |
| | Olsu_1338 | Putative esterase; COGs: COG4947 conserved hypothetical protein; InterPro IPR000801; KEGG: lba:Lebu_1199 putative esterase; PFAM: putative esterase; SPTR: C9KL17 Putative esterase; PFAM: Putative esterase. (447 aa) |
| | Olsu_1351 | COGs: COG0620 Methionine synthase II (cobalamin-independent); InterPro IPR002629; KEGG: apa:APP7_0911 methionine synthase II (cobalamin-independent); PFAM: Methionine synthase vitamin-B12 independent; SPTR: B9CLD7 Methionine synthase II; PFAM: Cobalamin-independent synthase, Catalytic domain. (378 aa) |
| | Olsu_1353 | ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: shi:Shel_01810 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C7N1G0 ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (236 aa) |
| | Olsu_1372 | ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: apv:Apar_0229 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: B9CN03 Macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter. (243 aa) |
| | Olsu_1395 | ATPase; KEGG: shi:Shel_02770 ATPase; SPTR: A4E8B9 Putative uncharacterized protein. (366 aa) |
| | Olsu_1402 | Protein of unknown function UPF0047; COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: tle:Tlet_0148 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: C0D1G5 Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: conserved hypothetical protein TIGR00149. (142 aa) |
| | Olsu_1424 | TfoX domain protein; InterPro IPR007076; KEGG: shi:Shel_25930 regulator of competence-specific genes; PFAM: TfoX domain protein; SPTR: C7N2U0 Regulator of competence-specific genes; PFAM: TfoX N-terminal domain. (101 aa) |
| | hpf | SSU ribosomal protein S30P;sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (192 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (839 aa) |
| | ubiX | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (194 aa) |
| | Olsu_1471 | Cation diffusion facilitator family transporter; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: eel:EUBELI_00361 hypothetical protein; PFAM: cation efflux protein; SPTR: B6G966 Putative uncharacterized protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter. (391 aa) |
