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Tagg_0029 Tagg_0029 Tagg_1171 Tagg_1171 Tagg_1285 Tagg_1285 spt4 spt4 Tagg_1375 Tagg_1375 rpoN rpoN rpoD rpoD rpoA2 rpoA2 Tagg_1406 Tagg_1406 Tagg_1407 Tagg_1407 rpoH rpoH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tagg_0029RNA polymerase Rpb4; InterPro IPR005574; KEGG: hypothetical protein; K03012 DNA-directed RNA polymerase II subunit D; PFAM: RNA polymerase Rpb4; SPTR: B8D6K2 RNA polymerase Rpb4; PFAM: RNA polymerase Rpb4. (121 aa)
Tagg_1171Hypothetical protein; SPTR: B8D3B2 DNA-directed RNA polymerase subunit P. (49 aa)
Tagg_1285Hypothetical protein; SPTR: B8D655 Putative uncharacterized protein. (117 aa)
spt4DNA-directed RNA polymerase, subunit E; Stimulates transcription elongation; Belongs to the archaeal Spt4 family. (68 aa)
Tagg_1375COGs: COG1095 DNA-directed RNA polymerase subunit E'; InterPro IPR005576:IPR003029:IPR004519; KEGG: zgc:92878; PFAM: RNA polymerase Rpb7 domain protein; PRIAM: DNA-directed RNA polymerase; SPTR: B8D6E0 DNA-directed RNA polymerase subunit E'; TIGRFAM: DNA-directed RNA polymerase; PFAM: S1 RNA binding domain; RNA polymerase Rpb7-like, N-terminal domain; TIGRFAM: DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. (192 aa)
rpoNDNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. (66 aa)
rpoDDNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (277 aa)
rpoA2DNA-directed RNA polymerase, subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (408 aa)
Tagg_1406DNA-directed RNA polymerase, subunit A; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (881 aa)
Tagg_1407DNA-directed RNA polymerase, subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1163 aa)
rpoHDNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. (87 aa)
Your Current Organism:
Thermosphaera aggregans
NCBI taxonomy Id: 633148
Other names: T. aggregans DSM 11486, Thermosphaera aggregans DSM 11486, Thermosphaera aggregans M11TL, Thermosphaera aggregans str. DSM 11486, Thermosphaera aggregans strain DSM 11486
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