5 items (Trichinella spiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sft-4	Surfeit locus protein 4-like protein. (277 aa)
	KdelR	ER lumen protein-retaining receptor. (212 aa)
	eca	Transmembrane emp24 domain-containing protein eca. (213 aa)
	sel-9	Suppressor/enhancer of lin-12 protein 9. (267 aa)
	TMED7	Transmembrane emp24 domain-containing protein 7. (205 aa)

Your Current Organism:

Trichinella spiralis

NCBI taxonomy Id: 6334
Other names: T. spiralis

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KdelR	TMED7	E5SBK7	E5SRJ8	ER lumen protein-retaining receptor.	Transmembrane emp24 domain-containing protein 7.	0.640
KdelR	eca	E5SBK7	E5SDK9	ER lumen protein-retaining receptor.	Transmembrane emp24 domain-containing protein eca.	0.608
KdelR	sel-9	E5SBK7	E5SFW2	ER lumen protein-retaining receptor.	Suppressor/enhancer of lin-12 protein 9.	0.677
KdelR	sft-4	E5SBK7	E5S1B0	ER lumen protein-retaining receptor.	Surfeit locus protein 4-like protein.	0.711
TMED7	KdelR	E5SRJ8	E5SBK7	Transmembrane emp24 domain-containing protein 7.	ER lumen protein-retaining receptor.	0.640
TMED7	eca	E5SRJ8	E5SDK9	Transmembrane emp24 domain-containing protein 7.	Transmembrane emp24 domain-containing protein eca.	0.942
TMED7	sel-9	E5SRJ8	E5SFW2	Transmembrane emp24 domain-containing protein 7.	Suppressor/enhancer of lin-12 protein 9.	0.959
TMED7	sft-4	E5SRJ8	E5S1B0	Transmembrane emp24 domain-containing protein 7.	Surfeit locus protein 4-like protein.	0.789
eca	KdelR	E5SDK9	E5SBK7	Transmembrane emp24 domain-containing protein eca.	ER lumen protein-retaining receptor.	0.608
eca	TMED7	E5SDK9	E5SRJ8	Transmembrane emp24 domain-containing protein eca.	Transmembrane emp24 domain-containing protein 7.	0.942
eca	sel-9	E5SDK9	E5SFW2	Transmembrane emp24 domain-containing protein eca.	Suppressor/enhancer of lin-12 protein 9.	0.982
eca	sft-4	E5SDK9	E5S1B0	Transmembrane emp24 domain-containing protein eca.	Surfeit locus protein 4-like protein.	0.842
sel-9	KdelR	E5SFW2	E5SBK7	Suppressor/enhancer of lin-12 protein 9.	ER lumen protein-retaining receptor.	0.677
sel-9	TMED7	E5SFW2	E5SRJ8	Suppressor/enhancer of lin-12 protein 9.	Transmembrane emp24 domain-containing protein 7.	0.959
sel-9	eca	E5SFW2	E5SDK9	Suppressor/enhancer of lin-12 protein 9.	Transmembrane emp24 domain-containing protein eca.	0.982
sel-9	sft-4	E5SFW2	E5S1B0	Suppressor/enhancer of lin-12 protein 9.	Surfeit locus protein 4-like protein.	0.826
sft-4	KdelR	E5S1B0	E5SBK7	Surfeit locus protein 4-like protein.	ER lumen protein-retaining receptor.	0.711
sft-4	TMED7	E5S1B0	E5SRJ8	Surfeit locus protein 4-like protein.	Transmembrane emp24 domain-containing protein 7.	0.789
sft-4	eca	E5S1B0	E5SDK9	Surfeit locus protein 4-like protein.	Transmembrane emp24 domain-containing protein eca.	0.842
sft-4	sel-9	E5S1B0	E5SFW2	Surfeit locus protein 4-like protein.	Suppressor/enhancer of lin-12 protein 9.	0.826