STRINGSTRING
USO1 USO1 NSFL1C NSFL1C Lman1-2 Lman1-2 Bcas3 Bcas3 Vmp1 Vmp1 SEC22B SEC22B vps51 vps51 Atp8b2 Atp8b2 VTI1A VTI1A trappc11 trappc11 GCC2 GCC2 Rab30 Rab30 Cog3 Cog3 lysmd3 lysmd3 PLEKHM2 PLEKHM2 pi4k2b-4 pi4k2b-4 SEC16A SEC16A HTT HTT YIPF5 YIPF5 Cog4 Cog4 COG7 COG7 sft-4 sft-4 tmed1 tmed1 eca eca sel-9 sel-9 tmed1-2 tmed1-2 TMED7 TMED7 Lman1 Lman1 cogc-2 cogc-2 GOLPH3 GOLPH3 Dym Dym Golga5 Golga5 Golga2 Golga2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
USO1General vesicular transport factor. (1575 aa)
NSFL1CNSFL1 cofactor p47. (810 aa)
Lman1-2Protein ERGIC-53. (926 aa)
Bcas3Breast carcinoma-amplified sequence 3-like protein. (983 aa)
Vmp1Vacuole membrane protein 1. (509 aa)
SEC22BVesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (215 aa)
vps51Vacuolar protein sorting-associated protein 51-like protein. (818 aa)
Atp8b2Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1332 aa)
VTI1AVesicle transport through interaction with t-SNAREs-like protein 1A. (223 aa)
trappc11Trafficking protein particle complex subunit 11. (1163 aa)
GCC2GRIP and coiled-coil domain-containing protein 2. (661 aa)
Rab30Ras-related protein Rab-30. (224 aa)
Cog3Conserved oligomeric Golgi complex subunit 3. (741 aa)
lysmd3LysM and putative peptidoglycan-binding domain-containing protein 3. (845 aa)
PLEKHM2Pleckstrin homology domain-containing family M member 2. (926 aa)
pi4k2b-4Phosphatidylinositol 4-kinase type 2-beta. (737 aa)
SEC16AProtein transport protein sec16. (1580 aa)
HTTHuntingtin. (3235 aa)
YIPF5Protein YIPF. (368 aa)
Cog4Conserved oligomeric Golgi complex subunit 4. (882 aa)
COG7Conserved oligomeric Golgi complex subunit 7. (737 aa)
sft-4Surfeit locus protein 4-like protein. (277 aa)
tmed1Transmembrane emp24 domain-containing protein 1. (228 aa)
ecaTransmembrane emp24 domain-containing protein eca. (213 aa)
sel-9Suppressor/enhancer of lin-12 protein 9. (267 aa)
tmed1-2Transmembrane emp24 domain-containing protein 1. (206 aa)
TMED7Transmembrane emp24 domain-containing protein 7. (205 aa)
Lman1Protein ERGIC-53. (274 aa)
cogc-2Conserved oligomeric Golgi complex subunit 2. (701 aa)
GOLPH3Golgi phosphoprotein 3. (818 aa)
DymDymeclin. (711 aa)
Golga5Golgin subfamily A member 5. (570 aa)
Golga2Golgin subfamily A member 2. (1189 aa)
Your Current Organism:
Trichinella spiralis
NCBI taxonomy Id: 6334
Other names: T. spiralis
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