25 items (Trichinella spiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sel-9	Suppressor/enhancer of lin-12 protein 9. (267 aa)
	Sec24a	Protein transport protein Sec24A. (45 aa)
	Lman1	Protein ERGIC-53. (274 aa)
	PDCD6	Programmed cell death protein 6. (203 aa)
	SEC24B	Protein transport protein Sec24B. (1186 aa)
	USO1	General vesicular transport factor. (1575 aa)
	yif1b-a	Protein YIF1B-A. (309 aa)
	SEC24C	Protein transport protein Sec24C. (1165 aa)
	Lman1-2	Protein ERGIC-53. (926 aa)
	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2. (459 aa)
	Sec13	Protein SEC13-like protein; Belongs to the WD repeat SEC13 family. (340 aa)
	SCAP	Sterol regulatory element-binding protein cleavage-activating protein. (1127 aa)
	SEC22B	Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (215 aa)
	ier3ip1	Immediate early response 3-interacting protein 1. (96 aa)
	ergic1	Endoplasmic reticulum-Golgi intermediate compartment protein 1. (313 aa)
	VTI1A	Vesicle transport through interaction with t-SNAREs-like protein 1A. (223 aa)
	Sec23a	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (903 aa)
	ergic3	Endoplasmic reticulum-Golgi intermediate compartment protein 3. (638 aa)
	cni	Protein cornichon. (110 aa)
	SEC16A	Protein transport protein sec16. (1580 aa)
	tmed1	Transmembrane emp24 domain-containing protein 1. (228 aa)
	eca	Transmembrane emp24 domain-containing protein eca. (213 aa)
	ZK180.4	GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	tmed1-2	Transmembrane emp24 domain-containing protein 1. (206 aa)
	TMED7	Transmembrane emp24 domain-containing protein 7. (205 aa)

Your Current Organism:

Trichinella spiralis

NCBI taxonomy Id: 6334
Other names: T. spiralis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERGIC2	ergic3	A0A0V1B7B1	A0A0V1BPU5	Endoplasmic reticulum-Golgi intermediate compartment protein 2.	Endoplasmic reticulum-Golgi intermediate compartment protein 3.	0.958
Lman1	SEC16A	A0A0V1AND5	A0A0V1BVS8	Protein ERGIC-53.	Protein transport protein sec16.	0.656
Lman1	SEC22B	A0A0V1AND5	A0A0V1BEB1	Protein ERGIC-53.	Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.	0.712
Lman1	SEC24B	A0A0V1AND5	A0A0V1AT96	Protein ERGIC-53.	Protein transport protein Sec24B.	0.529
Lman1	SEC24C	A0A0V1AND5	A0A0V1B4R1	Protein ERGIC-53.	Protein transport protein Sec24C.	0.664
Lman1	Sec13	A0A0V1AND5	A0A0V1B7I6	Protein ERGIC-53.	Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.	0.665
Lman1	Sec23a	A0A0V1AND5	A0A0V1BL57	Protein ERGIC-53.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.731
Lman1	Sec24a	A0A0V1AND5	A0A0V0YXM7	Protein ERGIC-53.	Protein transport protein Sec24A.	0.529
Lman1	USO1	A0A0V1AND5	A0A0V1B0N1	Protein ERGIC-53.	General vesicular transport factor.	0.632
Lman1	ZK180.4	A0A0V1AND5	E5SKH7	Protein ERGIC-53.	GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.	0.662
Lman1	cni	A0A0V1AND5	A0A0V1BQQ7	Protein ERGIC-53.	Protein cornichon.	0.570
Lman1	sel-9	A0A0V1AND5	E5SFW2	Protein ERGIC-53.	Suppressor/enhancer of lin-12 protein 9.	0.710
Lman1-2	SEC16A	A0A0V1B552	A0A0V1BVS8	Protein ERGIC-53.	Protein transport protein sec16.	0.656
Lman1-2	SEC22B	A0A0V1B552	A0A0V1BEB1	Protein ERGIC-53.	Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.	0.712
Lman1-2	SEC24B	A0A0V1B552	A0A0V1AT96	Protein ERGIC-53.	Protein transport protein Sec24B.	0.529
Lman1-2	SEC24C	A0A0V1B552	A0A0V1B4R1	Protein ERGIC-53.	Protein transport protein Sec24C.	0.664
Lman1-2	Sec13	A0A0V1B552	A0A0V1B7I6	Protein ERGIC-53.	Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.	0.665
Lman1-2	Sec23a	A0A0V1B552	A0A0V1BL57	Protein ERGIC-53.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.731
Lman1-2	Sec24a	A0A0V1B552	A0A0V0YXM7	Protein ERGIC-53.	Protein transport protein Sec24A.	0.529
Lman1-2	USO1	A0A0V1B552	A0A0V1B0N1	Protein ERGIC-53.	General vesicular transport factor.	0.632