STRINGSTRING
dnaK dnaK rho rho BAH98741.1 BAH98741.1 rhlE rhlE BAH98900.1 BAH98900.1 ppk ppk BAH99125.1 BAH99125.1 rppH rppH eno eno recQ recQ BAH99760.1 BAH99760.1 hfq hfq groEL groEL BAI00057.1 BAI00057.1 rne rne pnp pnp BAI00576.1 BAI00576.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dnaKHeat shock protein DnaK/Hsp70; Acts as a chaperone; Belongs to the heat shock protein 70 family. (634 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (432 aa)
BAH98741.1Hypothetical protein. (305 aa)
rhlERNA helicase; ATP-dependent, DEAD/DEAH; Belongs to the DEAD box helicase family. (445 aa)
BAH98900.1Ribonuclease R. (676 aa)
ppkPolyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (761 aa)
BAH99125.1poly(A) polymerase; tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (397 aa)
rppHNucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (170 aa)
enoPhosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (426 aa)
recQDNA helicase RecQ; ATP-dependent, DEAD/DEAH domain. (626 aa)
BAH99760.1Metal-dependent hydrolase. (547 aa)
hfqRNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (94 aa)
groELHeat shock protein GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (546 aa)
BAI00057.1DNA/RNA helicase; ATP-dependent Superfamily II, DEAD/DEAH. (400 aa)
rneRibonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (997 aa)
pnpPolyribonucleotide nucleotidyltransferase RNA binding S1; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (716 aa)
BAI00576.1DNA/RNA helicase; ATP-dependent Superfamily II, DEAD/DEAH; Belongs to the DEAD box helicase family. (586 aa)
Your Current Organism:
Acetobacter pasteurianus
NCBI taxonomy Id: 634452
Other names: A. pasteurianus IFO 3283-01, Acetobacter pasteurianus IFO 3283-01
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