(31 nodes) Mixed, incl. Viral process, and Phage P2 GpU network (Erwinia billingiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gpQ	Putative portal vertex protein; silverDB:661Eb00126. (356 aa)
	gpP	Probable terminase, ATPase subunit; silverDB:661Eb00127. (512 aa)
	gpO	Putative phage capsid scaffolding protein; silverDB:661Eb00128. (278 aa)
	gpN	Major phage capsid protein; silverDB:661Eb00129. (349 aa)
	gpM	Phage terminase/endonuclease subunit; silverDB:661Eb00130. (316 aa)
	gpL	Phage head completion/stabilization protein; silverDB:661Eb00131. (164 aa)
	EbC_01090	Phage tail protein X; silverDB:661Eb00132. (67 aa)
	gpR	Tail completion protein r; silverDB:661Eb00139. (161 aa)
	EbC_01150	Conserved uncharacterized protein; silverDB:661Eb00140. (214 aa)
	EbC_01160	Putative phage baseplate assembly protein; silverDB:661Eb00143. (184 aa)
	EbC_01170	Phage baseplate assembly protein; silverDB:661Eb00144. (107 aa)
	EbC_01180	Baseplate J family protein; silverDB:661Eb00145. (303 aa)
	EbC_01190	Phage tail protein I; silverDB:661Eb00146. (201 aa)
	EbC_01200	Phage Tail Collar domain protein; silverDB:661Eb00147. (371 aa)
	gpU	Putative phage tail protein; silverDB:661Eb00149. (143 aa)
	EbC_01230	Phage tail tape measure protein, TP901 family; silverDB:661Eb00151. (1063 aa)
	gpE	Putative phage tail protein E; silverDB:661Eb00152. (99 aa)
	fII	Major tail tube protein; silverDB:661Eb00153. (170 aa)
	fI	Major tail sheath protein; silverDB:661Eb00155. (395 aa)
	gpD	Regulator of late gene expression; silverDB:661Eb00156. (411 aa)
	EbC_11030	Phage baseplate assembly protein; silverDB:661Eb01482. (192 aa)
	EbC_11040	Phage baseplate assembly protein; silverDB:661Eb01483. (118 aa)
	EbC_11050	Phage baseplate assembly protein; silverDB:661Eb01484. (304 aa)
	EbC_11060	Phage tail protein; silverDB:661Eb01485. (204 aa)
	EbC_11070	Phage tail collar domain protein; silverDB:661Eb01486. (371 aa)
	EbC_11090	Major tail sheath protein; silverDB:661Eb01488. (390 aa)
	EbC_11100	Major tail tube protein; silverDB:661Eb01489. (171 aa)
	EbC_11110	Phage tail protein; silverDB:661Eb01490. (107 aa)
	EbC_11120	Phage tail tape measure protein; silverDB:661Eb01494. (881 aa)
	EbC_11130	Phage tail protein; silverDB:661Eb01495. (161 aa)
	EbC_11140	Phage late control D family protein; silverDB:661Eb01496. (364 aa)

Your Current Organism:

Erwinia billingiae

NCBI taxonomy Id: 634500
Other names: E. billingiae Eb661, Erwinia billingiae Eb661, Erwinia billingiae str. Eb661, Erwinia billingiae strain Eb661

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EbC_01090	EbC_01150	EbC_01090	EbC_01150	Phage tail protein X; silverDB:661Eb00132.	Conserved uncharacterized protein; silverDB:661Eb00140.	0.951
EbC_01090	EbC_01160	EbC_01090	EbC_01160	Phage tail protein X; silverDB:661Eb00132.	Putative phage baseplate assembly protein; silverDB:661Eb00143.	0.953
EbC_01090	EbC_01170	EbC_01090	EbC_01170	Phage tail protein X; silverDB:661Eb00132.	Phage baseplate assembly protein; silverDB:661Eb00144.	0.963
EbC_01090	EbC_01180	EbC_01090	EbC_01180	Phage tail protein X; silverDB:661Eb00132.	Baseplate J family protein; silverDB:661Eb00145.	0.965
EbC_01090	EbC_01190	EbC_01090	EbC_01190	Phage tail protein X; silverDB:661Eb00132.	Phage tail protein I; silverDB:661Eb00146.	0.964
EbC_01090	EbC_01200	EbC_01090	EbC_01200	Phage tail protein X; silverDB:661Eb00132.	Phage Tail Collar domain protein; silverDB:661Eb00147.	0.925
EbC_01090	EbC_01230	EbC_01090	EbC_01230	Phage tail protein X; silverDB:661Eb00132.	Phage tail tape measure protein, TP901 family; silverDB:661Eb00151.	0.833
EbC_01090	EbC_11030	EbC_01090	EbC_11030	Phage tail protein X; silverDB:661Eb00132.	Phage baseplate assembly protein; silverDB:661Eb01482.	0.911
EbC_01090	EbC_11040	EbC_01090	EbC_11040	Phage tail protein X; silverDB:661Eb00132.	Phage baseplate assembly protein; silverDB:661Eb01483.	0.934
EbC_01090	EbC_11050	EbC_01090	EbC_11050	Phage tail protein X; silverDB:661Eb00132.	Phage baseplate assembly protein; silverDB:661Eb01484.	0.937
EbC_01090	EbC_11060	EbC_01090	EbC_11060	Phage tail protein X; silverDB:661Eb00132.	Phage tail protein; silverDB:661Eb01485.	0.934
EbC_01090	EbC_11070	EbC_01090	EbC_11070	Phage tail protein X; silverDB:661Eb00132.	Phage tail collar domain protein; silverDB:661Eb01486.	0.864
EbC_01090	EbC_11090	EbC_01090	EbC_11090	Phage tail protein X; silverDB:661Eb00132.	Major tail sheath protein; silverDB:661Eb01488.	0.932
EbC_01090	EbC_11100	EbC_01090	EbC_11100	Phage tail protein X; silverDB:661Eb00132.	Major tail tube protein; silverDB:661Eb01489.	0.930
EbC_01090	EbC_11110	EbC_01090	EbC_11110	Phage tail protein X; silverDB:661Eb00132.	Phage tail protein; silverDB:661Eb01490.	0.904
EbC_01090	EbC_11120	EbC_01090	EbC_11120	Phage tail protein X; silverDB:661Eb00132.	Phage tail tape measure protein; silverDB:661Eb01494.	0.791
EbC_01090	EbC_11130	EbC_01090	EbC_11130	Phage tail protein X; silverDB:661Eb00132.	Phage tail protein; silverDB:661Eb01495.	0.949
EbC_01090	EbC_11140	EbC_01090	EbC_11140	Phage tail protein X; silverDB:661Eb00132.	Phage late control D family protein; silverDB:661Eb01496.	0.912
EbC_01090	fI	EbC_01090	EbC_01260	Phage tail protein X; silverDB:661Eb00132.	Major tail sheath protein; silverDB:661Eb00155.	0.932
EbC_01090	fII	EbC_01090	EbC_01250	Phage tail protein X; silverDB:661Eb00132.	Major tail tube protein; silverDB:661Eb00153.	0.930