(11 nodes) Mostly uncharacterized, incl. Phage P2 GpU, and Tail protein I network (Erwinia billingiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EbC_11030	Phage baseplate assembly protein; silverDB:661Eb01482. (192 aa)
	EbC_11040	Phage baseplate assembly protein; silverDB:661Eb01483. (118 aa)
	EbC_11050	Phage baseplate assembly protein; silverDB:661Eb01484. (304 aa)
	EbC_11060	Phage tail protein; silverDB:661Eb01485. (204 aa)
	EbC_11070	Phage tail collar domain protein; silverDB:661Eb01486. (371 aa)
	EbC_11090	Major tail sheath protein; silverDB:661Eb01488. (390 aa)
	EbC_11100	Major tail tube protein; silverDB:661Eb01489. (171 aa)
	EbC_11110	Phage tail protein; silverDB:661Eb01490. (107 aa)
	EbC_11120	Phage tail tape measure protein; silverDB:661Eb01494. (881 aa)
	EbC_11130	Phage tail protein; silverDB:661Eb01495. (161 aa)
	EbC_11140	Phage late control D family protein; silverDB:661Eb01496. (364 aa)

Your Current Organism:

Erwinia billingiae

NCBI taxonomy Id: 634500
Other names: E. billingiae Eb661, Erwinia billingiae Eb661, Erwinia billingiae str. Eb661, Erwinia billingiae strain Eb661

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
EbC_11030	EbC_11040	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage baseplate assembly protein; silverDB:661Eb01483.	0.984
EbC_11030	EbC_11050	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage baseplate assembly protein; silverDB:661Eb01484.	0.980
EbC_11030	EbC_11060	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage tail protein; silverDB:661Eb01485.	0.980
EbC_11030	EbC_11070	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage tail collar domain protein; silverDB:661Eb01486.	0.969
EbC_11030	EbC_11090	Phage baseplate assembly protein; silverDB:661Eb01482.	Major tail sheath protein; silverDB:661Eb01488.	0.962
EbC_11030	EbC_11100	Phage baseplate assembly protein; silverDB:661Eb01482.	Major tail tube protein; silverDB:661Eb01489.	0.952
EbC_11030	EbC_11110	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage tail protein; silverDB:661Eb01490.	0.903
EbC_11030	EbC_11120	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage tail tape measure protein; silverDB:661Eb01494.	0.861
EbC_11030	EbC_11130	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage tail protein; silverDB:661Eb01495.	0.932
EbC_11030	EbC_11140	Phage baseplate assembly protein; silverDB:661Eb01482.	Phage late control D family protein; silverDB:661Eb01496.	0.935
EbC_11040	EbC_11030	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage baseplate assembly protein; silverDB:661Eb01482.	0.984
EbC_11040	EbC_11050	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage baseplate assembly protein; silverDB:661Eb01484.	0.984
EbC_11040	EbC_11060	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage tail protein; silverDB:661Eb01485.	0.985
EbC_11040	EbC_11070	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage tail collar domain protein; silverDB:661Eb01486.	0.971
EbC_11040	EbC_11090	Phage baseplate assembly protein; silverDB:661Eb01483.	Major tail sheath protein; silverDB:661Eb01488.	0.981
EbC_11040	EbC_11100	Phage baseplate assembly protein; silverDB:661Eb01483.	Major tail tube protein; silverDB:661Eb01489.	0.962
EbC_11040	EbC_11110	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage tail protein; silverDB:661Eb01490.	0.952
EbC_11040	EbC_11120	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage tail tape measure protein; silverDB:661Eb01494.	0.871
EbC_11040	EbC_11130	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage tail protein; silverDB:661Eb01495.	0.960
EbC_11040	EbC_11140	Phage baseplate assembly protein; silverDB:661Eb01483.	Phage late control D family protein; silverDB:661Eb01496.	0.975