STRINGSTRING
SVI_0496 SVI_0496 SVI_0709 SVI_0709 SVI_0964 SVI_0964 SVI_1087 SVI_1087 SVI_1145 SVI_1145 SVI_1461 SVI_1461 SVI_1547 SVI_1547 SVI_1664 SVI_1664 SVI_1863 SVI_1863 SVI_2134 SVI_2134 SVI_2344 SVI_2344 viuA viuA SVI_2952 SVI_2952 SVI_2960 SVI_2960 SVI_2971 SVI_2971 SVI_2976 SVI_2976 SVI_3472 SVI_3472 SVI_3594 SVI_3594 SVI_3613 SVI_3613 SVI_3683 SVI_3683 SVI_3701 SVI_3701 SVI_4264 SVI_4264 SVI_4331 SVI_4331
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_0496Conserved hypothetical protein. (380 aa)
SVI_0709GGDEF domain protein. (314 aa)
SVI_0964Conserved hypothetical protein. (111 aa)
SVI_1087Conserved hypothetical protein. (1050 aa)
SVI_1145TPR domain protein. (718 aa)
SVI_1461vacJ lipoprotein, putative. (259 aa)
SVI_1547Tyrosine-specific protein phosphatase, putative. (156 aa)
SVI_1664Conserved hypothetical protein. (167 aa)
SVI_1863Conserved hypothetical protein. (641 aa)
SVI_2134Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (355 aa)
SVI_2344TonB-dependent receptor. (863 aa)
viuAFerric vibriobactin receptor. (688 aa)
SVI_2952Conserved hypothetical protein. (656 aa)
SVI_2960GGDEF domain protein. (169 aa)
SVI_2971Outer membrane porin, putative. (401 aa)
SVI_2976Conserved hypothetical protein; Belongs to the UPF0319 family. (232 aa)
SVI_3472TonB-dependent receptor. (667 aa)
SVI_3594Conserved hypothetical protein. (368 aa)
SVI_3613Outer membrane porin, putative. (402 aa)
SVI_3683Conserved hypothetical protein. (390 aa)
SVI_3701Outer membrane porin, putative. (346 aa)
SVI_4264Conserved hypothetical protein. (516 aa)
SVI_4331TonB-dependent siderophore receptor. (738 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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