STRINGSTRING
SVI_0081 SVI_0081 SVI_0400 SVI_0400 SVI_0401 SVI_0401 SVI_1036 SVI_1036 SVI_2053 SVI_2053 SVI_2278 SVI_2278 SVI_3437 SVI_3437 SVI_3546 SVI_3546 SVI_3824 SVI_3824 SVI_4318 SVI_4318
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_0081Conserved hypothetical protein. (606 aa)
SVI_0400Conserved hypothetical protein. (241 aa)
SVI_0401Conserved hypothetical protein. (387 aa)
SVI_1036Conserved hypothetical protein. (614 aa)
SVI_2053Lipoprotein, putative. (589 aa)
SVI_2278TonB-dependent receptor. (944 aa)
SVI_3437TonB-dependent receptor. (850 aa)
SVI_3546TonB-dependent receptor. (863 aa)
SVI_3824TonB-dependent receptor. (901 aa)
SVI_4318TonB-dependent receptor. (899 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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