STRINGSTRING
SVI_2228 SVI_2228 SVI_2229 SVI_2229 SVI_2230 SVI_2230 SVI_2235 SVI_2235 SVI_2241 SVI_2241
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_2228Type III secretion system apparatus protein, SpaR/YscT family. (229 aa)
SVI_2229Type III secretion system EscS protein. (102 aa)
SVI_2230Type III secretion system EscR protein. (216 aa)
SVI_2235Type III secretion system apparatus protein, HrcV family. (685 aa)
SVI_2241Type III secretion system apparatus lipoprotein. (243 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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